ID   APIBP_PARG4             Reviewed;         312 AA.
AC   B1G898;
DT   07-OCT-2020, integrated into UniProtKB/Swiss-Prot.
DT   29-APR-2008, sequence version 1.
DT   03-AUG-2022, entry version 29.
DE   RecName: Full=D-apiose import binding protein {ECO:0000305};
DE   AltName: Full=D-apiose binding SBP {ECO:0000303|PubMed:29867142};
DE   Flags: Precursor;
GN   ORFNames=BgramDRAFT_5566 {ECO:0000312|EMBL:EDT07597.1},
GN   R8871_06335 {ECO:0000312|EMBL:CAB3737527.1};
OS   Paraburkholderia graminis (strain ATCC 700544 / DSM 17151 / LMG 18924 /
OS   NCIMB 13744 / C4D1M).
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Burkholderiaceae; Paraburkholderia.
OX   NCBI_TaxID=396598;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA   Bruce D., Goodwin L., Pitluck S., Larimer F., Land M.L., Hauser L.,
RA   Tiedje J., Richardson P.;
RT   "Sequencing of the draft genome and assembly of Burkholderia graminis
RT   C4D1M.";
RL   Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M;
RA   De Canck E.;
RL   Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   FUNCTION, AND SUBSTRATE-BINDING.
RX   PubMed=29867142; DOI=10.1038/s41589-018-0067-7;
RA   Carter M.S., Zhang X., Huang H., Bouvier J.T., Francisco B.S.,
RA   Vetting M.W., Al-Obaidi N., Bonanno J.B., Ghosh A., Zallot R.G.,
RA   Andersen H.M., Almo S.C., Gerlt J.A.;
RT   "Functional assignment of multiple catabolic pathways for D-apiose.";
RL   Nat. Chem. Biol. 14:696-705(2018).
CC   -!- FUNCTION: Part of an ABC transporter complex involved in D-apiose
CC       import (Probable). Binds D-apiose, D-ribose and D-ribulose
CC       (PubMed:29867142). {ECO:0000269|PubMed:29867142,
CC       ECO:0000305|PubMed:29867142}.
CC   -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the bacterial solute-binding protein 2 family.
CC       {ECO:0000305}.
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DR   EMBL; ABLD01000025; EDT07597.1; -; Genomic_DNA.
DR   EMBL; CADIKA010000024; CAB3737527.1; -; Genomic_DNA.
DR   RefSeq; WP_006052135.1; NZ_CADIKA010000024.1.
DR   AlphaFoldDB; B1G898; -.
DR   SMR; B1G898; -.
DR   EnsemblBacteria; EDT07597; EDT07597; BgramDRAFT_5566.
DR   Proteomes; UP000005045; Unassembled WGS sequence.
DR   GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR   GO; GO:0008643; P:carbohydrate transport; IEA:UniProtKB-KW.
DR   InterPro; IPR028082; Peripla_BP_I.
DR   InterPro; IPR025997; SBP_2_dom.
DR   Pfam; PF13407; Peripla_BP_4; 1.
DR   SUPFAM; SSF53822; SSF53822; 1.
PE   1: Evidence at protein level;
KW   Periplasm; Signal; Sugar transport; Transport.
FT   SIGNAL          1..26
FT                   /evidence="ECO:0000255"
FT   CHAIN           27..312
FT                   /note="D-apiose import binding protein"
FT                   /id="PRO_5002764152"
FT   BINDING         39
FT                   /ligand="D-apiofuranose"
FT                   /ligand_id="ChEBI:CHEBI:141215"
FT                   /evidence="ECO:0000250|UniProtKB:Q2JZQ5"
FT   BINDING         115..116
FT                   /ligand="D-apiofuranose"
FT                   /ligand_id="ChEBI:CHEBI:141215"
FT                   /evidence="ECO:0000250|UniProtKB:Q2JZQ5"
FT   BINDING         162..164
FT                   /ligand="D-apiofuranose"
FT                   /ligand_id="ChEBI:CHEBI:141215"
FT                   /evidence="ECO:0000250|UniProtKB:Q2JZQ5"
FT   BINDING         168
FT                   /ligand="D-apiofuranose"
FT                   /ligand_id="ChEBI:CHEBI:141215"
FT                   /evidence="ECO:0000250|UniProtKB:Q2JZQ5"
FT   BINDING         218
FT                   /ligand="D-apiofuranose"
FT                   /ligand_id="ChEBI:CHEBI:141215"
FT                   /evidence="ECO:0000250|UniProtKB:Q2JZQ5"
FT   BINDING         243
FT                   /ligand="D-apiofuranose"
FT                   /ligand_id="ChEBI:CHEBI:141215"
FT                   /evidence="ECO:0000250|UniProtKB:Q2JZQ5"
FT   BINDING         263
FT                   /ligand="D-apiofuranose"
FT                   /ligand_id="ChEBI:CHEBI:141215"
FT                   /evidence="ECO:0000250|UniProtKB:Q2JZQ5"
SQ   SEQUENCE   312 AA;  33080 MW;  57A170A332F70052 CRC64;
     MKASKRWVAL AAATLTLFTA TGTAQAANLI AIITPSHDNP FFKAEADTAN ARAKALGYDT
     IVLVHDDDAN KQSNLVDTAI ARGAKAIILD NAGSEASISA VRKAKAAGIP SFLIDREINA
     TGIAVSQIVS NNYQGAQLGG RAFVKALGEK GNYVELVGRE ADINAGIRSK GYHDVIDQFP
     NMKMVERQSA NWSQTEAYRV METILQSHPD VKGVIAGNDT MAMGASAALK AAKRSDVIVV
     GFDGSNDVRD AIMRNDIRAT VLQPAALAAT EAVEQADKYM KTGSTGKPEK QLINCSLITK
     ANAGKLDMFA LR