APL25_ORYSI
ID APL25_ORYSI Reviewed; 460 AA.
AC B8AVJ9;
DT 16-JAN-2019, integrated into UniProtKB/Swiss-Prot.
DT 03-MAR-2009, sequence version 1.
DT 25-MAY-2022, entry version 75.
DE RecName: Full=APETALA2-like protein 5 {ECO:0000305};
GN Name=AP2-5 {ECO:0000305}; ORFNames=OsI_17685 {ECO:0000312|EMBL:EEC78134.1};
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2]
RP FUNCTION, DISRUPTION PHENOTYPE, TISSUE SPECIFICITY, SUBCELLULAR LOCATION,
RP AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Guang-Lu-Ai No.4;
RX PubMed=22408071; DOI=10.1105/tpc.111.094383;
RA Zhou Y., Lu D., Li C., Luo J., Zhu B.-F., Zhu J., Shangguan Y., Wang Z.,
RA Sang T., Zhou B., Han B.;
RT "Genetic control of seed shattering in rice by the APETALA2 transcription
RT factor shattering abortion1.";
RL Plant Cell 24:1034-1048(2012).
CC -!- FUNCTION: Transcription factor (PubMed:22408071). Involved in spikelet
CC transition and development (PubMed:22408071). Prevents lemma and palea
CC elongation as well as grain growth (PubMed:22408071). Required for seed
CC shattering through specifying abscission zone (AZ) development
CC (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
CC -!- SUBUNIT: May form homodimer. {ECO:0000250|UniProtKB:P47927}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00366,
CC ECO:0000269|PubMed:22408071}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, leaves, stems, nodes,
CC sheaths, panicles and young spikelets. Accumulates in the spikelet
CC abscission zone (AZ) via a positive regulation by the transcription
CC factor SH4. {ECO:0000269|PubMed:22408071}.
CC -!- DEVELOPMENTAL STAGE: In developing panicles, highly expressed in the
CC spikelet abscission zone (AZ) and the inner floral organs of 2 mm long
CC spikelets. Later present at weak levels in the apiculus as well as in
CC the palea and lemma to progressively fades out in 8 mm long spikelets.
CC {ECO:0000269|PubMed:22408071}.
CC -!- DISRUPTION PHENOTYPE: Several spikelet and inflorescence developmental
CC defects, including altered florets palea and lemma structures, abnormal
CC numbers, size, appearance, and identities of floral organs, reduced
CC primary branches number, and longer and fewer grains associated with a
CC loss of grain shattering. Crook-neck-like rachilla between the sterile
CC lemmas and the rudimentary glumes in place of the spikelet abscission
CC zone (AZ). {ECO:0000269|PubMed:22408071}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. AP2
CC subfamily. {ECO:0000305}.
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DR EMBL; CM000129; EEC78134.1; -; Genomic_DNA.
DR AlphaFoldDB; B8AVJ9; -.
DR SMR; B8AVJ9; -.
DR STRING; 39946.B8AVJ9; -.
DR EnsemblPlants; BGIOSGA017250-TA; BGIOSGA017250-PA; BGIOSGA017250.
DR Gramene; BGIOSGA017250-TA; BGIOSGA017250-PA; BGIOSGA017250.
DR HOGENOM; CLU_035462_4_1_1; -.
DR OMA; KFDQNSN; -.
DR Proteomes; UP000007015; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0005667; C:transcription regulator complex; IDA:UniProtKB.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:UniProtKB.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IDA:UniProtKB.
DR GO; GO:0060860; P:regulation of floral organ abscission; IMP:UniProtKB.
DR GO; GO:0009909; P:regulation of flower development; IMP:UniProtKB.
DR GO; GO:0080050; P:regulation of seed development; IMP:UniProtKB.
DR GO; GO:0009409; P:response to cold; IEA:EnsemblPlants.
DR GO; GO:0097548; P:seed abscission; IMP:UniProtKB.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 2.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 2.
DR SMART; SM00380; AP2; 2.
DR SUPFAM; SSF54171; SSF54171; 2.
DR PROSITE; PS51032; AP2_ERF; 2.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..460
FT /note="APETALA2-like protein 5"
FT /id="PRO_0000445996"
FT DNA_BIND 111..167
FT /note="AP2/ERF 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT DNA_BIND 203..260
FT /note="AP2/ERF 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 1..39
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 91..111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 284..320
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 410..429
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 99..108
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT MOTIF 283..287
FT /note="EAR"
FT /evidence="ECO:0000250|UniProtKB:P47927"
SQ SEQUENCE 460 AA; 48506 MW; 2A8F04E9807894CC CRC64;
MWDLNDSPAA EAAPPPLSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV VTRQFFPPAV
PGGGGDPAPG NARAGWLRLA GAAPPVAATG PAASAAVSKK SRRGPRSRSS QYRGVTFYRR
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN
LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEEEAA
RAYDRAAIKC NGKDAVTNFD PSIYAGEFEP PAAATGDAAE HNLDLSLGSS AGSKRGNVDG
GGDDEITGGG GGGTGSDQRV PMAFDLDWQT AAARSTKAKF DQNSNHPQMP PVLQVTHLPF
SPRHHHQFLS NGDPGTAGGL SLTIGAGMAG HWPPQQQQGW GNAGGMSWPL PPHPPPPPTN
AAAAATATAA AASSRFPPYI ATQASTWLQK NGFHSLTRPT
