ILI1_ORYSJ
ID ILI1_ORYSJ Reviewed; 104 AA.
AC Q7X742; A0A0P0WFD4;
DT 14-MAY-2014, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 2.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Transcription factor ILI1;
DE Short=OsILI1;
DE AltName: Full=Basic helix-loop-helix protein 154;
DE Short=OsbHLH154;
DE AltName: Full=Protein INCREASED LEAF INCLINATION 1;
DE AltName: Full=bHLH transcription factor bHLH154;
GN Name=BHLH154 {ECO:0000303|PubMed:20472752}; Synonyms=ILI1;
GN OrderedLocusNames=Os04g0641700 {ECO:0000305}, LOC_Os04g54900;
GN ORFNames=OsJ_16370 {ECO:0000312|EMBL:EAZ32165.1}, OSJNBa0063C18.7,
GN OSJNBb0079B02.12;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP FUNCTION, INTERACTION WITH IBH1, TISSUE SPECIFICITY, AND INDUCTION BY
RP EPIBRASSINOLIDE.
RX PubMed=20009022; DOI=10.1105/tpc.109.070441;
RA Zhang L.Y., Bai M.Y., Wu J., Zhu J.Y., Wang H., Zhang Z., Wang W., Sun Y.,
RA Zhao J., Sun X., Yang H., Xu Y., Kim S.H., Fujioka S., Lin W.H., Chong K.,
RA Lu T., Wang Z.Y.;
RT "Antagonistic HLH/bHLH transcription factors mediate brassinosteroid
RT regulation of cell elongation and plant development in rice and
RT Arabidopsis.";
RL Plant Cell 21:3767-3780(2009).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=20472752; DOI=10.1104/pp.110.153593;
RA Carretero-Paulet L., Galstyan A., Roig-Villanova I., Martinez-Garcia J.F.,
RA Bilbao-Castro J.R., Robertson D.L.;
RT "Genome-wide classification and evolutionary analysis of the bHLH family of
RT transcription factors in Arabidopsis, poplar, rice, moss, and algae.";
RL Plant Physiol. 153:1398-1412(2010).
CC -!- FUNCTION: Atypical and probable non DNA-binding bHLH transcription
CC factor that acts as a positive regulator of cell elongation and plant
CC development. Binds the transcription repressor IBH1 and forms a
CC heterodimer of antagonistic bHLH transcription factors that function
CC downstream of BZR1 to mediate brassinosteroid regulation of cell
CC elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.
CC -!- SUBUNIT: Interacts with IBH1. {ECO:0000269|PubMed:20009022}.
CC -!- TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths, lamina
CC joint, stems and panicles. Expressed at low levels in roots.
CC {ECO:0000269|PubMed:20009022}.
CC -!- INDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}.
CC -!- MISCELLANEOUS: Gain-of-function mutants ili1-D (T-DNA tagging) show
CC increased lamina joint inclination and hypersensitivity to
CC brassinosteroid. {ECO:0000305|PubMed:20009022}.
CC -!- SIMILARITY: Belongs to the bHLH protein family.
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DR EMBL; AL606455; CAD41853.2; -; Genomic_DNA.
DR EMBL; AL731607; CAE05966.1; -; Genomic_DNA.
DR EMBL; AP008210; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014960; BAS91271.1; -; Genomic_DNA.
DR EMBL; CM000141; EAZ32165.1; -; Genomic_DNA.
DR RefSeq; XP_015635178.1; XM_015779692.1.
DR AlphaFoldDB; Q7X742; -.
DR SMR; Q7X742; -.
DR STRING; 4530.OS04T0641700-00; -.
DR PaxDb; Q7X742; -.
DR PRIDE; Q7X742; -.
DR EnsemblPlants; Os04t0641700-00; Os04t0641700-00; Os04g0641700.
DR GeneID; 107278038; -.
DR Gramene; Os04t0641700-00; Os04t0641700-00; Os04g0641700.
DR KEGG; osa:107278038; -.
DR eggNOG; ENOG502R3DI; Eukaryota.
DR HOGENOM; CLU_183267_0_0_1; -.
DR InParanoid; Q7X742; -.
DR OMA; PRNGAHR; -.
DR OrthoDB; 1607838at2759; -.
DR PlantReactome; R-OSA-5632095; Brassinosteroid signaling.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q7X742; OS.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0009741; P:response to brassinosteroid; IEP:UniProtKB.
DR GO; GO:0009826; P:unidimensional cell growth; IMP:UniProtKB.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR InterPro; IPR044293; PRE.
DR PANTHER; PTHR46446; PTHR46446; 1.
DR Pfam; PF00010; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 1: Evidence at protein level;
KW Growth regulation; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..104
FT /note="Transcription factor ILI1"
FT /id="PRO_0000429088"
FT DOMAIN 16..71
FT /note="bHLH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 104 AA; 11185 MW; 51EFDE521893E400 CRC64;
MSSSRRSRSR RAGSSVPSSS SSSRTSISED QIAELLSKLQ ALLPESQARN GAHRGSAARV
LQETCSYIRS LHQEVDNLSE TLAQLLASPD VTSDQAAVIR SLLM
