ID   ILI3_ORYSJ              Reviewed;          91 AA.
AC   Q10R47; A0A0P0VTQ4;
DT   14-MAY-2014, integrated into UniProtKB/Swiss-Prot.
DT   22-AUG-2006, sequence version 1.
DT   03-AUG-2022, entry version 111.
DE   RecName: Full=Transcription factor ILI3;
DE            Short=OsILI3;
DE   AltName: Full=Basic helix-loop-helix protein 153;
DE            Short=OsbHLH153;
DE   AltName: Full=Protein INCREASED LEAF INCLINATION 3;
DE   AltName: Full=bHLH transcription factor bHLH153;
GN   Name=ILI3; Synonyms=BHLH153;
GN   OrderedLocusNames=Os03g0171700, LOC_Os03g07540; ORFNames=OsJ_09590;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16109971; DOI=10.1101/gr.3869505;
RG   The rice chromosome 3 sequencing consortium;
RA   Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA   Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA   Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA   Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA   Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA   Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA   Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA   Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA   Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA   Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA   O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA   Jin W., Lee H.R., Jiang J., Jackson S.;
RT   "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT   and diverged grass species.";
RL   Genome Res. 15:1284-1291(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RG   The rice full-length cDNA consortium;
RT   "Oryza sativa full length cDNA.";
RL   Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN   [7]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=20472752; DOI=10.1104/pp.110.153593;
RA   Carretero-Paulet L., Galstyan A., Roig-Villanova I., Martinez-Garcia J.F.,
RA   Bilbao-Castro J.R., Robertson D.L.;
RT   "Genome-wide classification and evolutionary analysis of the bHLH family of
RT   transcription factors in Arabidopsis, poplar, rice, moss, and algae.";
RL   Plant Physiol. 153:1398-1412(2010).
CC   -!- FUNCTION: Atypical and probable non DNA-binding bHLH transcription
CC       factor that integrates multiple signaling pathways to regulate cell
CC       elongation and plant development. {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the bHLH protein family.
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DR   EMBL; DP000009; ABF94221.1; -; Genomic_DNA.
DR   EMBL; AP008209; BAF11028.1; -; Genomic_DNA.
DR   EMBL; AP014959; BAS82538.1; -; Genomic_DNA.
DR   EMBL; CM000140; EAZ25751.1; -; Genomic_DNA.
DR   EMBL; AK241674; BAH01084.1; -; mRNA.
DR   RefSeq; XP_015630063.1; XM_015774577.1.
DR   AlphaFoldDB; Q10R47; -.
DR   SMR; Q10R47; -.
DR   PaxDb; Q10R47; -.
DR   PRIDE; Q10R47; -.
DR   EnsemblPlants; Os03t0171700-01; Os03t0171700-01; Os03g0171700.
DR   GeneID; 4331778; -.
DR   Gramene; Os03t0171700-01; Os03t0171700-01; Os03g0171700.
DR   KEGG; osa:4331778; -.
DR   eggNOG; ENOG502SS07; Eukaryota.
DR   HOGENOM; CLU_183267_0_0_1; -.
DR   InParanoid; Q10R47; -.
DR   OMA; ETCSHIT; -.
DR   OrthoDB; 1589357at2759; -.
DR   Proteomes; UP000000763; Chromosome 3.
DR   Proteomes; UP000007752; Chromosome 3.
DR   Proteomes; UP000059680; Chromosome 3.
DR   Genevisible; Q10R47; OS.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   Gene3D; 4.10.280.10; -; 1.
DR   InterPro; IPR011598; bHLH_dom.
DR   InterPro; IPR036638; HLH_DNA-bd_sf.
DR   InterPro; IPR044293; PRE.
DR   PANTHER; PTHR46446; PTHR46446; 1.
DR   Pfam; PF00010; HLH; 1.
DR   SUPFAM; SSF47459; SSF47459; 1.
DR   PROSITE; PS50888; BHLH; 1.
PE   3: Inferred from homology;
KW   Growth regulation; Reference proteome; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..91
FT                   /note="Transcription factor ILI3"
FT                   /id="PRO_0000429092"
FT   DOMAIN          3..58
FT                   /note="bHLH"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
SQ   SEQUENCE   91 AA;  9951 MW;  3AF50444D5259C7D CRC64;
     MSSRRGGGGG GGRITDEEIN ELISKLQALL PESSRSRGAS RSSASKLLKE TCSYIKSLHR
     EVDDLSDRLS ELMSTMDNNS PQAEIIRSLL R