IM30_ORYSJ
ID IM30_ORYSJ Reviewed; 317 AA.
AC Q8S0J7; Q0JGZ1;
DT 01-MAR-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Probable membrane-associated 30 kDa protein, chloroplastic;
DE Flags: Precursor;
GN OrderedLocusNames=Os01g0895100, LOC_Os01g67000;
GN ORFNames=B1078G07.38, OsJ_04390 {ECO:0000312|EMBL:EAZ14468.1}, P0696G06.15;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP INTERACTION WITH RTBV CAPSID PROTEIN.
RX PubMed=15914861; DOI=10.1099/vir.0.80920-0;
RA Guerra-Peraza O., Kirk D., Seltzer V., Veluthambi K., Schmit A.C., Hohn T.,
RA Herzog E.;
RT "Coat proteins of Rice tungro bacilliform virus and Mungbean yellow mosaic
RT virus contain multiple nuclear-localization signals and interact with
RT importin alpha.";
RL J. Gen. Virol. 86:1815-1826(2005).
CC -!- SUBUNIT: Interacts with the rice tungro bacilliform virus (RTBV) capsid
CC protein. {ECO:0000269|PubMed:15914861}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast inner membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}. Plastid,
CC chloroplast thylakoid membrane {ECO:0000250}; Peripheral membrane
CC protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the PspA/IM30 family. {ECO:0000305}.
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DR EMBL; AP003316; BAC06258.1; -; Genomic_DNA.
DR EMBL; AP003407; BAB90216.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06987.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75695.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ14468.1; -; Genomic_DNA.
DR EMBL; AK058611; BAG86752.1; -; mRNA.
DR EMBL; AK067698; BAG90547.1; -; mRNA.
DR RefSeq; XP_015615370.1; XM_015759884.1.
DR AlphaFoldDB; Q8S0J7; -.
DR SMR; Q8S0J7; -.
DR STRING; 4530.OS01T0895100-01; -.
DR PaxDb; Q8S0J7; -.
DR PRIDE; Q8S0J7; -.
DR EnsemblPlants; Os01t0895100-01; Os01t0895100-01; Os01g0895100.
DR EnsemblPlants; Os01t0895100-02; Os01t0895100-02; Os01g0895100.
DR GeneID; 4324967; -.
DR Gramene; Os01t0895100-01; Os01t0895100-01; Os01g0895100.
DR Gramene; Os01t0895100-02; Os01t0895100-02; Os01g0895100.
DR KEGG; osa:4324967; -.
DR eggNOG; ENOG502QSHK; Eukaryota.
DR HOGENOM; CLU_056466_0_0_1; -.
DR InParanoid; Q8S0J7; -.
DR OMA; MIFRAKA; -.
DR OrthoDB; 1460726at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q8S0J7; OS.
DR GO; GO:0009706; C:chloroplast inner membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR InterPro; IPR007157; PspA_IM30.
DR PANTHER; PTHR31088; PTHR31088; 1.
DR Pfam; PF04012; PspA_IM30; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Coiled coil; Host-virus interaction; Membrane; Plastid;
KW Plastid inner membrane; Reference proteome; Thylakoid; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN ?..317
FT /note="Probable membrane-associated 30 kDa protein,
FT chloroplastic"
FT /id="PRO_0000029849"
FT REGION 265..317
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 92..246
FT /evidence="ECO:0000255"
FT COMPBIAS 271..285
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 299..317
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 317 AA; 35089 MW; E85F12D0B1E0334F CRC64;
MEIRAPPTSL RLAPPPPASA SFRRTALRTS FLNGSVSLRL IQVRQSNVNR FKCNGIRSNL
LDRFSRVVKS YANAVLSSFE DPEKILDQAV LEMNDDLTKM RQATAQVLAS QKRLENKYKA
AEQASDDWYR RAQLALQKGD EDLAREALKR RKSYADNASS LKAQLDQQKG VVENLVSNTR
VLESKIAEAK QKKDTLKARA QSAKTSTKVS EMLGNVNTSG ALSAFEKMEE KVMAMESQAE
ALGQLATDDL EGKFALLETS SVDDDLAQMK KEISGSSSKG ELPPGRTAVS NSGAARPFRD
IEIENELNEL RKKANEY
