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ING3_MOUSE
ID   ING3_MOUSE              Reviewed;         421 AA.
AC   Q8VEK6; Q99JS6; Q9ERB2;
DT   15-FEB-2005, integrated into UniProtKB/Swiss-Prot.
DT   15-FEB-2005, sequence version 2.
DT   03-AUG-2022, entry version 159.
DE   RecName: Full=Inhibitor of growth protein 3;
DE   AltName: Full=p47ING3;
GN   Name=Ing3;
OS   Mus musculus (Mouse).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
OX   NCBI_TaxID=10090;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RA   Zenklusen J.C., Green E.D.;
RL   Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=C57BL/6J; TISSUE=Embryo;
RX   PubMed=16141072; DOI=10.1126/science.1112014;
RA   Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
RA   Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
RA   Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.,
RA   Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R.,
RA   Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T.,
RA   Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A.,
RA   Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B.,
RA   Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M.,
RA   Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S.,
RA   Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
RA   Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D.,
RA   Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M.,
RA   Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H.,
RA   Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V.,
RA   Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S.,
RA   Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H.,
RA   Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N.,
RA   Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F.,
RA   Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G.,
RA   Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z.,
RA   Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
RA   Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
RA   Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S.,
RA   Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K.,
RA   Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R.,
RA   van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H.,
RA   Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M.,
RA   Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C.,
RA   Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S.,
RA   Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K.,
RA   Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M.,
RA   Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C.,
RA   Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A.,
RA   Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.;
RT   "The transcriptional landscape of the mammalian genome.";
RL   Science 309:1559-1563(2005).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=Czech II, and FVB/N; TISSUE=Mammary tumor;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [4]
RP   ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-181 AND LYS-264, AND
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Embryonic fibroblast;
RX   PubMed=23806337; DOI=10.1016/j.molcel.2013.06.001;
RA   Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y.,
RA   Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.;
RT   "SIRT5-mediated lysine desuccinylation impacts diverse metabolic
RT   pathways.";
RL   Mol. Cell 50:919-930(2013).
CC   -!- FUNCTION: Component of the NuA4 histone acetyltransferase (HAT) complex
CC       which is involved in transcriptional activation of select genes
CC       principally by acetylation of nucleosomal histones H4 and H2A. This
CC       modification may both alter nucleosome - DNA interactions and promote
CC       interaction of the modified histones with other proteins which
CC       positively regulate transcription. This complex may be required for the
CC       activation of transcriptional programs associated with oncogene and
CC       proto-oncogene mediated growth induction, tumor suppressor mediated
CC       growth arrest and replicative senescence, apoptosis, and DNA repair.
CC       NuA4 may also play a direct role in DNA repair when directly recruited
CC       to sites of DNA damage. Component of a SWR1-like complex that
CC       specifically mediates the removal of histone H2A.Z/H2AZ1 from the
CC       nucleosome (By similarity). {ECO:0000250}.
CC   -!- SUBUNIT: Interacts with H3K4me3 and to a lesser extent with H3K4me2 (By
CC       similarity). Component of the NuA4 histone acetyltransferase complex
CC       which contains the catalytic subunit KAT5/TIP60 and the subunits EP400,
CC       TRRAP/PAF400, BRD8/SMAP, EPC1, DMAP1/DNMAP1, RUVBL1/TIP49, RUVBL2,
CC       ING3, actin, ACTL6A/BAF53A, MORF4L1/MRG15, MORF4L2/MRGX, MRGBP,
CC       YEATS4/GAS41, VPS72/YL1 and MEAF6. The NuA4 complex interacts with MYC.
CC       HTATTIP/TIP60, EPC1, and ING3 together constitute a minimal HAT complex
CC       termed Piccolo NuA4. Component of a SWR1-like complex (By similarity).
CC       {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC   -!- DOMAIN: The PHD-type zinc finger mediates the binding to H3K4me3.
CC       {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the ING family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAG23286.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC       Sequence=AAH18342.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC       Sequence=BAC38021.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR   EMBL; AY007791; AAG23286.1; ALT_INIT; mRNA.
DR   EMBL; AK080787; BAC38021.1; ALT_INIT; mRNA.
DR   EMBL; BC005721; AAH05721.1; -; mRNA.
DR   EMBL; BC018342; AAH18342.1; ALT_INIT; mRNA.
DR   CCDS; CCDS39434.1; -.
DR   RefSeq; NP_001297990.1; NM_001311061.1.
DR   RefSeq; NP_076115.3; NM_023626.4.
DR   AlphaFoldDB; Q8VEK6; -.
DR   SMR; Q8VEK6; -.
DR   BioGRID; 214920; 3.
DR   ComplexPortal; CPX-747; Piccolo NuA4 histone acetyltransferase complex.
DR   ComplexPortal; CPX-990; NuA4 histone acetyltransferase complex.
DR   IntAct; Q8VEK6; 4.
DR   MINT; Q8VEK6; -.
DR   STRING; 10090.ENSMUSP00000031680; -.
DR   iPTMnet; Q8VEK6; -.
DR   PhosphoSitePlus; Q8VEK6; -.
DR   EPD; Q8VEK6; -.
DR   MaxQB; Q8VEK6; -.
DR   PaxDb; Q8VEK6; -.
DR   PRIDE; Q8VEK6; -.
DR   ProteomicsDB; 267337; -.
DR   Antibodypedia; 31689; 248 antibodies from 32 providers.
DR   DNASU; 71777; -.
DR   Ensembl; ENSMUST00000031680; ENSMUSP00000031680; ENSMUSG00000029670.
DR   GeneID; 71777; -.
DR   KEGG; mmu:71777; -.
DR   UCSC; uc009bat.1; mouse.
DR   CTD; 54556; -.
DR   MGI; MGI:1919027; Ing3.
DR   VEuPathDB; HostDB:ENSMUSG00000029670; -.
DR   eggNOG; KOG1973; Eukaryota.
DR   GeneTree; ENSGT00940000156619; -.
DR   InParanoid; Q8VEK6; -.
DR   OMA; YEWFHWK; -.
DR   OrthoDB; 1434088at2759; -.
DR   PhylomeDB; Q8VEK6; -.
DR   TreeFam; TF106497; -.
DR   BioGRID-ORCS; 71777; 19 hits in 77 CRISPR screens.
DR   PRO; PR:Q8VEK6; -.
DR   Proteomes; UP000000589; Chromosome 6.
DR   RNAct; Q8VEK6; protein.
DR   Bgee; ENSMUSG00000029670; Expressed in animal zygote and 256 other tissues.
DR   ExpressionAtlas; Q8VEK6; baseline and differential.
DR   Genevisible; Q8VEK6; MM.
DR   GO; GO:0035267; C:NuA4 histone acetyltransferase complex; ISS:UniProtKB.
DR   GO; GO:0005654; C:nucleoplasm; ISO:MGI.
DR   GO; GO:0000786; C:nucleosome; ISO:MGI.
DR   GO; GO:0005634; C:nucleus; IC:ComplexPortal.
DR   GO; GO:0032777; C:Piccolo NuA4 histone acetyltransferase complex; ISS:UniProtKB.
DR   GO; GO:0000812; C:Swr1 complex; ISS:UniProtKB.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0035064; F:methylated histone binding; ISO:MGI.
DR   GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR   GO; GO:0016573; P:histone acetylation; ISO:MGI.
DR   GO; GO:0043968; P:histone H2A acetylation; ISS:UniProtKB.
DR   GO; GO:0043967; P:histone H4 acetylation; ISS:UniProtKB.
DR   GO; GO:0043065; P:positive regulation of apoptotic process; ISS:UniProtKB.
DR   GO; GO:1905168; P:positive regulation of double-strand break repair via homologous recombination; ISO:MGI.
DR   GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IC:ComplexPortal.
DR   GO; GO:0042981; P:regulation of apoptotic process; IC:ComplexPortal.
DR   GO; GO:0051726; P:regulation of cell cycle; ISO:MGI.
DR   GO; GO:1902275; P:regulation of chromatin organization; IC:ComplexPortal.
DR   GO; GO:2000779; P:regulation of double-strand break repair; IC:ComplexPortal.
DR   GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR   CDD; cd15585; PHD_ING3; 1.
DR   Gene3D; 3.30.40.10; -; 1.
DR   InterPro; IPR038004; ING3.
DR   InterPro; IPR042020; ING3_PHD.
DR   InterPro; IPR028651; ING_fam.
DR   InterPro; IPR024610; ING_N_histone-binding.
DR   InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR019787; Znf_PHD-finger.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR10333; PTHR10333; 1.
DR   PANTHER; PTHR10333:SF99; PTHR10333:SF99; 1.
DR   Pfam; PF12998; ING; 1.
DR   SMART; SM01408; ING; 1.
DR   SMART; SM00249; PHD; 1.
DR   SUPFAM; SSF57903; SSF57903; 1.
DR   PROSITE; PS01359; ZF_PHD_1; 1.
DR   PROSITE; PS50016; ZF_PHD_2; 1.
PE   1: Evidence at protein level;
KW   Acetylation; Chromatin regulator; Growth regulation; Isopeptide bond;
KW   Metal-binding; Nucleus; Reference proteome; Transcription;
KW   Transcription regulation; Ubl conjugation; Zinc; Zinc-finger.
FT   CHAIN           1..421
FT                   /note="Inhibitor of growth protein 3"
FT                   /id="PRO_0000212666"
FT   ZN_FING         363..412
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00146"
FT   REGION          129..163
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          286..323
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        144..163
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         366
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   BINDING         368
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   BINDING         379
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   BINDING         384
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   BINDING         390
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   BINDING         393
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   BINDING         406
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   BINDING         409
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   SITE            365
FT                   /note="Histone H3K4me3 binding"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   SITE            376
FT                   /note="Histone H3K4me3 binding"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   SITE            380
FT                   /note="Histone H3K4me3 binding"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   SITE            388
FT                   /note="Histone H3K4me3 binding"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UK53"
FT   MOD_RES         181
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0007744|PubMed:23806337"
FT   MOD_RES         264
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0007744|PubMed:23806337"
FT   CROSSLNK        148
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q9NXR8"
FT   CROSSLNK        165
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q9NXR8"
FT   CROSSLNK        167
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q9NXR8"
FT   CROSSLNK        256
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q9NXR8"
FT   CONFLICT        257
FT                   /note="N -> T (in Ref. 1; AAG23286)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   421 AA;  46847 MW;  E786062A26E3BF96 CRC64;
     MLYLEDYLEM IEQLPMDLRD RFTEMREMDL QVQNAMDQLE QRVSEFFMNA KKNKPEWREE
     QMASIKKDYY KALEDADEKV QLANQIYDLV DRHLRKLDQE LAKFKMELEA DNAGITEILE
     RRSLELDAPS QPVNNHHAHS HTPVEKRKYN PTSHHAAADH IPEKKFKSEA LLSTLTSDAS
     KENTLGCRNN NSTASCNNAY NVNSSQPLAS YNIGSLSSGA GAGAITMAAA QAVQATAQMK
     EGRRTSSLKA SYEAFKNNDF QLGKEFSIPR ETAGYSSSSA LMTTLTQNAS SSATDSRSGR
     KSKNNTKSSS QQSSSSSSSS SSSSLSLCSS SSTVVQEVSQ QATVVPESDS NSQVDWTYDP
     NEPRYCICNQ VSYGEMVGCD NQDCPIEWFH YGCVGLTEAP KGKWFCPQCT AAMKRRGSRH
     K
 
 
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