ID   IOJAC_ARATH             Reviewed;         238 AA.
AC   Q9LDY9; Q8LAC1;
DT   31-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   25-MAY-2022, entry version 119.
DE   RecName: Full=Protein Iojap, chloroplastic;
DE   Flags: Precursor;
GN   Name=IJ; OrderedLocusNames=At3g12930; ORFNames=MGH6.5;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA   Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT   features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT   clones.";
RL   DNA Res. 7:131-135(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA   Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA   Feldmann K.A.;
RT   "Full-length cDNA from Arabidopsis thaliana.";
RL   Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: May be a ribosome silencing factor (Potential). Involved in
CC       plastid biogenesis (By similarity). {ECO:0000250, ECO:0000305}.
CC   -!- SUBUNIT: Interacts with chloroplast ribosomal protein L14 (rpl14).
CC       {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC   -!- SIMILARITY: Belongs to the Iojap/RsfS family. {ECO:0000305}.
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DR   EMBL; AB026645; BAB02500.1; -; Genomic_DNA.
DR   EMBL; CP002686; AEE75263.1; -; Genomic_DNA.
DR   EMBL; AY139986; AAM98129.1; -; mRNA.
DR   EMBL; BT002591; AAO00951.1; -; mRNA.
DR   EMBL; AY087920; AAM65470.1; -; mRNA.
DR   RefSeq; NP_566439.1; NM_112129.2.
DR   AlphaFoldDB; Q9LDY9; -.
DR   SMR; Q9LDY9; -.
DR   BioGRID; 5812; 6.
DR   IntAct; Q9LDY9; 6.
DR   STRING; 3702.AT3G12930.1; -.
DR   iPTMnet; Q9LDY9; -.
DR   PaxDb; Q9LDY9; -.
DR   PRIDE; Q9LDY9; -.
DR   ProteomicsDB; 247180; -.
DR   EnsemblPlants; AT3G12930.1; AT3G12930.1; AT3G12930.
DR   GeneID; 820478; -.
DR   Gramene; AT3G12930.1; AT3G12930.1; AT3G12930.
DR   KEGG; ath:AT3G12930; -.
DR   Araport; AT3G12930; -.
DR   TAIR; locus:2089235; AT3G12930.
DR   eggNOG; ENOG502RY19; Eukaryota.
DR   HOGENOM; CLU_078387_0_0_1; -.
DR   InParanoid; Q9LDY9; -.
DR   OMA; LCLNDLY; -.
DR   OrthoDB; 1590818at2759; -.
DR   PhylomeDB; Q9LDY9; -.
DR   PRO; PR:Q9LDY9; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9LDY9; baseline and differential.
DR   Genevisible; Q9LDY9; AT.
DR   GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR   GO; GO:0042644; C:chloroplast nucleoid; IDA:TAIR.
DR   GO; GO:0000427; C:plastid-encoded plastid RNA polymerase complex; IPI:TAIR.
DR   GO; GO:0043023; F:ribosomal large subunit binding; IBA:GO_Central.
DR   GO; GO:0090071; P:negative regulation of ribosome biogenesis; IBA:GO_Central.
DR   GO; GO:0017148; P:negative regulation of translation; IBA:GO_Central.
DR   Gene3D; 3.30.460.10; -; 1.
DR   HAMAP; MF_01477; Iojap_RsfS; 1.
DR   InterPro; IPR004394; Iojap/RsfS/C7orf30.
DR   InterPro; IPR043519; NT_sf.
DR   PANTHER; PTHR21043; PTHR21043; 1.
DR   SUPFAM; SSF81301; SSF81301; 1.
DR   TIGRFAMs; TIGR00090; rsfS_iojap_ybeB; 1.
PE   2: Evidence at transcript level;
KW   Chloroplast; Plastid; Reference proteome; Transit peptide.
FT   TRANSIT         1..66
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           67..238
FT                   /note="Protein Iojap, chloroplastic"
FT                   /id="PRO_0000419744"
FT   CONFLICT        15
FT                   /note="A -> S (in Ref. 4; AAM65470)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        23..24
FT                   /note="VS -> IL (in Ref. 4; AAM65470)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   238 AA;  26378 MW;  3D52DEDEE84C1F0C CRC64;
     MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT
     SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV VFRSTDVKSP TAEVDDDAES
     LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY
     GKVANGDVKP NSWTLLDFGD VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN