IOJAM_ARATH
ID IOJAM_ARATH Reviewed; 184 AA.
AC Q9CAF9; Q8LGB8;
DT 31-OCT-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Protein Iojap-related, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g67620; ORFNames=F12B7.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Kim C.J., Chen H., Quinitio C., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP FUNCTION, AND SUBCELLULAR LOCATION.
RX PubMed=21908688; DOI=10.1104/pp.111.183129;
RA Narsai R., Law S.R., Carrie C., Xu L., Whelan J.;
RT "In-depth temporal transcriptome profiling reveals a crucial developmental
RT switch with roles for RNA processing and organelle metabolism that are
RT essential for germination in Arabidopsis.";
RL Plant Physiol. 157:1342-1362(2011).
CC -!- FUNCTION: May be a ribosome silencing factor involved in organelle
CC biogenesis and required for germination. {ECO:0000269|PubMed:21908688}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:21908688}.
CC -!- SIMILARITY: Belongs to the Iojap/RsfS family. {ECO:0000305}.
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DR EMBL; AC011020; AAG52301.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34671.1; -; Genomic_DNA.
DR EMBL; BT025743; ABF83633.1; -; mRNA.
DR EMBL; AK175676; BAD43439.1; -; mRNA.
DR EMBL; AK176034; BAD43797.1; -; mRNA.
DR EMBL; AK229872; BAF01701.1; -; mRNA.
DR EMBL; AK229957; BAF01783.1; -; mRNA.
DR EMBL; AY084358; AAM60940.1; -; mRNA.
DR RefSeq; NP_564901.1; NM_105428.4.
DR AlphaFoldDB; Q9CAF9; -.
DR SMR; Q9CAF9; -.
DR STRING; 3702.AT1G67620.1; -.
DR PaxDb; Q9CAF9; -.
DR PRIDE; Q9CAF9; -.
DR ProteomicsDB; 247181; -.
DR EnsemblPlants; AT1G67620.1; AT1G67620.1; AT1G67620.
DR GeneID; 843083; -.
DR Gramene; AT1G67620.1; AT1G67620.1; AT1G67620.
DR KEGG; ath:AT1G67620; -.
DR Araport; AT1G67620; -.
DR TAIR; locus:2008560; AT1G67620.
DR eggNOG; KOG3212; Eukaryota.
DR HOGENOM; CLU_092688_3_0_1; -.
DR InParanoid; Q9CAF9; -.
DR OMA; KTRRRDH; -.
DR OrthoDB; 1590818at2759; -.
DR PhylomeDB; Q9CAF9; -.
DR PRO; PR:Q9CAF9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CAF9; baseline and differential.
DR Genevisible; Q9CAF9; AT.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0043023; F:ribosomal large subunit binding; IBA:GO_Central.
DR GO; GO:0090071; P:negative regulation of ribosome biogenesis; IBA:GO_Central.
DR GO; GO:0017148; P:negative regulation of translation; IBA:GO_Central.
DR Gene3D; 3.30.460.10; -; 1.
DR HAMAP; MF_01477; Iojap_RsfS; 1.
DR InterPro; IPR004394; Iojap/RsfS/C7orf30.
DR InterPro; IPR043519; NT_sf.
DR PANTHER; PTHR21043; PTHR21043; 1.
DR SUPFAM; SSF81301; SSF81301; 1.
DR TIGRFAMs; TIGR00090; rsfS_iojap_ybeB; 1.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Transit peptide.
FT TRANSIT 1..39
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 40..184
FT /note="Protein Iojap-related, mitochondrial"
FT /id="PRO_0000419745"
FT CONFLICT 15
FT /note="N -> D (in Ref. 5; AAM60940)"
FT /evidence="ECO:0000305"
FT CONFLICT 35
FT /note="S -> T (in Ref. 5; AAM60940)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 184 AA; 20550 MW; 5C3DDEEA750EE968 CRC64;
MLTTLRSRCS SLLLNQSWKL APNRIFASSP SFSSSAGISN VSEILTLPEV EKILADVKAD
NVTVIPTHNH CFWADFTVIA TGRSDWHLRN IAQALVYRAK QKQKGAKHVM LPSVQGYNSK
WIVIDYGKFV VHALDEKARG YFNLESLWSA ESSGTDTSDQ DLQNVFVKVR PKNNSKRKPA
KVSS
