IRX14_ORYSJ
ID IRX14_ORYSJ Reviewed; 524 AA.
AC Q653F4; A0A023NDK3; A0A0N7KMM2; Q0D9Z8; Q9FRT0;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Probable beta-1,4-xylosyltransferase IRX14 {ECO:0000305};
DE EC=2.4.2.- {ECO:0000305};
DE AltName: Full=OsGT43J {ECO:0000303|PubMed:24525904};
DE AltName: Full=Probable glucuronosyltransferase Os06g0687900 {ECO:0000305};
DE AltName: Full=Protein IRREGULAR XYLEM 14 homolog {ECO:0000305};
DE Short=OsIRX14 {ECO:0000303|PubMed:23596448};
GN Name=IRX14 {ECO:0000303|PubMed:23596448};
GN Synonyms=GT43J {ECO:0000303|PubMed:24525904};
GN OrderedLocusNames=Os06g0687900 {ECO:0000312|EMBL:BAF20325.1},
GN LOC_Os06g47340 {ECO:0000305};
GN ORFNames=OsJ_22428 {ECO:0000312|EMBL:EAZ38081.1},
GN P0623A10.33 {ECO:0000312|EMBL:BAD46063.1},
GN P0661G04.6 {ECO:0000312|EMBL:BAD45607.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND SUBCELLULAR LOCATION.
RX PubMed=24525904; DOI=10.4161/psb.27809;
RA Lee C., Teng Q., Zhong R., Yuan Y., Ye Z.H.;
RT "Functional roles of rice glycosyltransferase family GT43 in xylan
RT biosynthesis.";
RL Plant Signal. Behav. 9:E27809-E27809(2014).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 234-524.
RC STRAIN=cv. Nipponbare;
RA Liu S., Takano T.;
RT "Cloning of cDNA coding for UDP-glucuronyltransferase-like protein in
RT rice.";
RL Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP FUNCTION.
RX PubMed=23596448; DOI=10.3389/fpls.2013.00083;
RA Chiniquy D., Varanasi P., Oh T., Harholt J., Katnelson J., Singh S.,
RA Auer M., Simmons B., Adams P.D., Scheller H.V., Ronald P.C.;
RT "Three novel rice genes closely related to the Arabidopsis IRX9, IRX9L, and
RT IRX14 genes and their roles in xylan biosynthesis.";
RL Front. Plant Sci. 4:83-83(2013).
CC -!- FUNCTION: Probable beta-1,4-xylosyltransferase involved in xylan
CC biosynthesis in cell walls. {ECO:0000269|PubMed:23596448,
CC ECO:0000269|PubMed:24525904}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane
CC {ECO:0000269|PubMed:24525904}; Single-pass type II membrane protein
CC {ECO:0000305|PubMed:24525904}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 43 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB20991.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAF20325.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAS99209.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; KJ206907; AHW98790.1; -; mRNA.
DR EMBL; AP003935; BAD45607.1; -; Genomic_DNA.
DR EMBL; AP005395; BAD46063.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20325.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014962; BAS99209.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000143; EAZ38081.1; -; Genomic_DNA.
DR EMBL; AB054003; BAB20991.1; ALT_INIT; mRNA.
DR RefSeq; XP_015643675.1; XM_015788189.1.
DR AlphaFoldDB; Q653F4; -.
DR SMR; Q653F4; -.
DR STRING; 4530.OS06T0687900-01; -.
DR CAZy; GT43; Glycosyltransferase Family 43.
DR iPTMnet; Q653F4; -.
DR PaxDb; Q653F4; -.
DR PRIDE; Q653F4; -.
DR GeneID; 4341895; -.
DR KEGG; osa:4341895; -.
DR eggNOG; KOG1476; Eukaryota.
DR HOGENOM; CLU_2055752_0_0_1; -.
DR InParanoid; Q653F4; -.
DR OrthoDB; 901158at2759; -.
DR PlantReactome; R-OSA-5654909; Xylan biosynthesis.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q653F4; OS.
DR GO; GO:0000139; C:Golgi membrane; IDA:UniProtKB.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0015018; F:galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity; IEA:InterPro.
DR GO; GO:0042285; F:xylosyltransferase activity; IBA:GO_Central.
DR GO; GO:0005975; P:carbohydrate metabolic process; IBA:GO_Central.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0010417; P:glucuronoxylan biosynthetic process; IBA:GO_Central.
DR GO; GO:0009834; P:plant-type secondary cell wall biogenesis; IBA:GO_Central.
DR GO; GO:0045492; P:xylan biosynthetic process; IDA:UniProtKB.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR005027; Glyco_trans_43.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR PANTHER; PTHR10896; PTHR10896; 1.
DR Pfam; PF03360; Glyco_transf_43; 1.
DR SUPFAM; SSF53448; SSF53448; 1.
PE 2: Evidence at transcript level;
KW Cell wall biogenesis/degradation; Glycoprotein; Glycosyltransferase;
KW Golgi apparatus; Membrane; Reference proteome; Signal-anchor; Transferase;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..524
FT /note="Probable beta-1,4-xylosyltransferase IRX14"
FT /id="PRO_0000407560"
FT TOPO_DOM 1..51
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 52..71
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 72..524
FT /note="Lumenal"
FT /evidence="ECO:0000305"
FT REGION 21..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 492..524
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 495..524
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 132
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 135
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 240
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 353
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CONFLICT 409
FT /note="D -> Y (in Ref. 6; BAB20991)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 524 AA; 57267 MW; BE470016EFBEB6FA CRC64;
MMKSLLPQSQ LRRSAAAASA ARSSGGGAGS GGADGAGSDG GAGGRAPATS TFWFLLHALC
CLVSLFLGFR FSRLLFFLLF STTALYSSTS SSSSSAVLRA TTTTTTTTTT TTTTTNTFTL
SFQANPNPPP SNLSNHTALD AAGAAGHTQS HVVVGRHGIR IRPWPHPDPV EVMRAHRIME
RVQEEQRRWY GVKEPRHVLV VTPTYSRAFQ ALHLTGLLHS LRNVPYPLTW IVVEAGGTTN
ATASLLARSD LTIVHIPFPD RMPHDWADRH ATENRMRLHA LRVIRERKMD GVIVFADDSN
VHSLELFDEV QKVQWMGAVS VGILAHTGTA DQPRLSEEDK QNMPLPVQGP ACNSSGHLAG
WHTFNSLPFA GKTATVVGEA APVLPRGLEW AGFVLNSRIL WKEAEGKPDW VKDLDAVGEN
GEEIENPLIL LNDPSSVEPL GNCGKKILLW WLRVEARADS KFPQGWVIEP PLDIVVPAKR
TPWPETTAEL SAELVDSKQD QEGRRLSRTD RSSRSRSTTK RKEN
