IRX9_ORYSJ
ID IRX9_ORYSJ Reviewed; 338 AA.
AC Q6Z3Y6; A0A023NCQ5;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Probable beta-1,4-xylosyltransferase IRX9 {ECO:0000305};
DE EC=2.4.2.- {ECO:0000305};
DE AltName: Full=OsGT43C {ECO:0000303|PubMed:24525904};
DE AltName: Full=Probable glucuronosyltransferase Os07g0694400 {ECO:0000305};
DE AltName: Full=Protein IRREGULAR XYLEM 9 homolog {ECO:0000305};
DE Short=OsIRX9 {ECO:0000303|PubMed:23596448};
GN Name=IRX9 {ECO:0000303|PubMed:23596448};
GN OrderedLocusNames=Os07g0694400 {ECO:0000312|EMBL:BAT03373.1},
GN LOC_Os07g49370 {ECO:0000305};
GN ORFNames=P0627E10.10 {ECO:0000312|EMBL:BAC84059.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=24525904; DOI=10.4161/psb.27809;
RA Lee C., Teng Q., Zhong R., Yuan Y., Ye Z.H.;
RT "Functional roles of rice glycosyltransferase family GT43 in xylan
RT biosynthesis.";
RL Plant Signal. Behav. 9:E27809-E27809(2014).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP FUNCTION.
RX PubMed=23596448; DOI=10.3389/fpls.2013.00083;
RA Chiniquy D., Varanasi P., Oh T., Harholt J., Katnelson J., Singh S.,
RA Auer M., Simmons B., Adams P.D., Scheller H.V., Ronald P.C.;
RT "Three novel rice genes closely related to the Arabidopsis IRX9, IRX9L, and
RT IRX14 genes and their roles in xylan biosynthesis.";
RL Front. Plant Sci. 4:83-83(2013).
CC -!- FUNCTION: Probable beta-1,4-xylosyltransferase involved in xylan
CC biosynthesis in cell walls. {ECO:0000269|PubMed:23596448}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000305}; Single-
CC pass type II membrane protein {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 43 family.
CC {ECO:0000305}.
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DR EMBL; KJ206900; AHW98783.1; -; mRNA.
DR EMBL; AP005199; BAC84059.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22652.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT03373.1; -; Genomic_DNA.
DR EMBL; AK060667; BAG87531.1; -; mRNA.
DR RefSeq; XP_015646092.1; XM_015790606.1.
DR AlphaFoldDB; Q6Z3Y6; -.
DR SMR; Q6Z3Y6; -.
DR STRING; 4530.OS07T0694400-01; -.
DR CAZy; GT43; Glycosyltransferase Family 43.
DR PaxDb; Q6Z3Y6; -.
DR PRIDE; Q6Z3Y6; -.
DR EnsemblPlants; Os07t0694400-01; Os07t0694400-01; Os07g0694400.
DR GeneID; 4344394; -.
DR Gramene; Os07t0694400-01; Os07t0694400-01; Os07g0694400.
DR KEGG; osa:4344394; -.
DR eggNOG; KOG1476; Eukaryota.
DR HOGENOM; CLU_044006_2_0_1; -.
DR InParanoid; Q6Z3Y6; -.
DR OMA; HRHLLMK; -.
DR OrthoDB; 901158at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q6Z3Y6; OS.
DR GO; GO:0000139; C:Golgi membrane; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0015018; F:galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity; IEA:InterPro.
DR GO; GO:0042285; F:xylosyltransferase activity; IBA:GO_Central.
DR GO; GO:0005975; P:carbohydrate metabolic process; IBA:GO_Central.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0010417; P:glucuronoxylan biosynthetic process; IBA:GO_Central.
DR GO; GO:0009834; P:plant-type secondary cell wall biogenesis; IBA:GO_Central.
DR GO; GO:0045492; P:xylan biosynthetic process; IDA:UniProtKB.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR005027; Glyco_trans_43.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR PANTHER; PTHR10896; PTHR10896; 1.
DR Pfam; PF03360; Glyco_transf_43; 1.
DR SUPFAM; SSF53448; SSF53448; 1.
PE 2: Evidence at transcript level;
KW Cell wall biogenesis/degradation; Glycoprotein; Glycosyltransferase;
KW Golgi apparatus; Membrane; Reference proteome; Signal-anchor; Transferase;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..338
FT /note="Probable beta-1,4-xylosyltransferase IRX9"
FT /id="PRO_0000407561"
FT TOPO_DOM 1..27
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 28..46
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 47..338
FT /note="Lumenal"
FT /evidence="ECO:0000305"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 232
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 314
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 338 AA; 37603 MW; B18FD48D87A2F752 CRC64;
MASAGGCKKK TGNSRSRSPR SPVVLRRAML HSSLCFLVGL LAGLAAPSDW PAAAGAAVFL
RTLRASNVIF SRSSNRPQQP QLVVVVTTTE QSDDSERRAA GLTRTAHALR LVSPPLLWLV
VEEAPAEKHA APPTARLLRR TGVVHRHLLM KQGDDDFSMQ ISMRREQQRN VALRHIEDHR
IAGVVLFGGL ADIYDLRLLH HLRDIRTFGA WPVATVSAYE RKVMVQGPLC INTSSSSVIT
RGWFDMDMDM AAGGERRAAA DRPPPETLME VGGFAFSSWM LWDPHRWDRF PLSDPDASQE
SVKFVQRVAV EEYNQSTTRG MPDSDCSQIM LWRIQTTL
