ISW2_ORYSJ
ID ISW2_ORYSJ Reviewed; 1107 AA.
AC Q7G8Y3; B7EXS1; Q0JMS0; Q5JJL5; Q5ZC99; Q93VU7;
DT 04-JAN-2005, integrated into UniProtKB/Swiss-Prot.
DT 04-JAN-2005, sequence version 2.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Probable chromatin-remodeling complex ATPase chain;
DE EC=3.6.4.-;
DE AltName: Full=ISW2-like;
DE AltName: Full=Sucrose nonfermenting protein 2 homolog;
GN OrderedLocusNames=Os01g0367900, LOC_Os01g27040;
GN ORFNames=B1329D01.23, OsJ_01780 {ECO:0000312|EMBL:EEE54577.1}, P0043B10.9,
GN P0560B06.13, P0784G04.20;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Lemont;
RA Huang E.N., de la Bastide M., Vil D.M., Preston R.R., Spiegel L.A.,
RA See L.H., Shah R., Matero A., O'Shaughnessy A., Rodriguez M., Shekher M.,
RA Swaby I., Schutz K., Habermann K., Parnell L.D., Nascimento L.U.,
RA Dedhia N.N., McCombie W.R.;
RT "Genomic sequence for Oryza sativa clone 10P20, Lemont strain, complete
RT sequence.";
RL Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Possesses intrinsic ATP-dependent nucleosome-remodeling
CC activity. Constitutes the catalytic subunit of several complexes
CC capable of forming ordered nucleosome arrays on chromatin in vitro (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00624}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. ISWI subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAK53826.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAB64747.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC011806; AAK53826.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP003236; BAD61441.1; -; Genomic_DNA.
DR EMBL; AP003281; BAB64747.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP006530; BAD88342.1; -; Genomic_DNA.
DR EMBL; AP008247; BAD89475.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04958.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS72153.1; -; Genomic_DNA.
DR EMBL; CM000138; EEE54577.1; -; Genomic_DNA.
DR EMBL; AK105265; BAG97168.1; -; mRNA.
DR RefSeq; XP_015621490.1; XM_015766004.1.
DR AlphaFoldDB; Q7G8Y3; -.
DR SMR; Q7G8Y3; -.
DR STRING; 4530.OS01T0367900-01; -.
DR PaxDb; Q7G8Y3; -.
DR PRIDE; Q7G8Y3; -.
DR EnsemblPlants; Os01t0367900-01; Os01t0367900-01; Os01g0367900.
DR GeneID; 4325731; -.
DR Gramene; Os01t0367900-01; Os01t0367900-01; Os01g0367900.
DR KEGG; osa:4325731; -.
DR eggNOG; KOG0385; Eukaryota.
DR HOGENOM; CLU_000315_0_0_1; -.
DR InParanoid; Q7G8Y3; -.
DR OMA; GWINPGK; -.
DR OrthoDB; 61251at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q7G8Y3; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0008094; F:ATP-dependent activity, acting on DNA; IBA:GO_Central.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0031491; F:nucleosome binding; IEA:InterPro.
DR CDD; cd17997; DEXHc_SMARCA1_SMARCA5; 1.
DR CDD; cd00167; SANT; 1.
DR Gene3D; 1.10.1040.30; -; 1.
DR Gene3D; 3.40.50.10810; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR044754; Isw1/2_DEXHc.
DR InterPro; IPR015194; ISWI_HAND-dom.
DR InterPro; IPR036306; ISWI_HAND-dom_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR InterPro; IPR015195; SLIDE.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR000330; SNF2_N.
DR Pfam; PF09110; HAND; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF09111; SLIDE; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF101224; SSF101224; 1.
DR SUPFAM; SSF46689; SSF46689; 2.
DR SUPFAM; SSF52540; SSF52540; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51293; SANT; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Chromatin regulator; Coiled coil; Helicase; Hydrolase;
KW Nucleotide-binding; Nucleus; Reference proteome; Repeat.
FT CHAIN 1..1107
FT /note="Probable chromatin-remodeling complex ATPase chain"
FT /id="PRO_0000074332"
FT DOMAIN 243..408
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT DOMAIN 536..687
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT DOMAIN 877..929
FT /note="SANT 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00624"
FT DOMAIN 978..1039
FT /note="SANT 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00624"
FT REGION 1..124
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 177..217
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1049..1107
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 121..147
FT /evidence="ECO:0000255"
FT COILED 1029..1067
FT /evidence="ECO:0000255"
FT MOTIF 359..362
FT /note="DEAH box"
FT COMPBIAS 12..45
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 53..82
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 92..113
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1049..1066
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1070..1089
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1090..1107
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 256..263
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ SEQUENCE 1107 AA; 127636 MW; B1E67E2DF52FCDD1 CRC64;
MAKPVKYDEE EEEVSSSGEE EEEQSDGAGS GSGEEEDEEE EEAPAAAAGE AAGGEEEEVD
EEEIEAVTTG AGADEEEEES GAAAAAPGEG DEESQSTEDD EAVVGEDDDA DEAEGGAVVG
KREKARLKEM QKLKKQKIQE ILDTQNAAVD ADMNNKGKGR LKYLLQQTEI FAHFAKGNQS
KEKKPRGRGR HASKMTEEEE DEEYLKEEED ALAGSGGTRL LSQPSCIKGK MRDYQLAGLN
WLIRLYENGI NGILADEMGL GKTLQTISLL GYLHEFRGIT GPHMVVAPKS TLGNWIKEIQ
RFCPILRAVK FLGNPEERNH IRENLLQPGK FDVCVTSFEM AIKEKTTLKR FSWRYIIIDE
AHRIKNENSL LSKTMRIYNT NYRLLITGTP LQNNLHELWS LLNFLLPEIF SSAETFDEWF
QISGENDQQE VVQQLHKVLR PFLLRRLKSD VEKGLPPKKE TILKVGMSQM QKQYYRALLQ
KDLEVINAGG ERKRLLNIAM QLRKCCNHPY LFQGAEPGPP YTTGEHLVEN AGKMVLLDKL
LPKLKDRDSR VLIFSQMTRL LDILEDYLMY RGYQYCRIDG NTGGEDRDAS IEAFNKPGSE
KFVFLLSTRA GGLGINLATA DVVVLYDSDW NPQADLQAQD RAHRIGQKKE VQVFRFCTEY
TIEEKVIERA YKKLALDALV IQQGRLAEQK TVNKDDLLQM VRFGAEMVFS SKDSTITDED
IDRIIAKGEE TTAELDAKMK KFTEDAIKFK MDDTAELYDF DDDKEENKLD FKKLVSDNWI
EPPRRERKRN YSESEYFKQA LRQGAPAKPR EPRIPRMPHL HDFQFFNNQR LNELYEKEVR
YLMQANQKKD TIDGEDEDQL EPLTAEEQEE KEQLLEEGFA TWTRRDFNTF IRACEKYGRN
DIRSIAAEME GKTEEEVQRY AKVFKERYKE LSDYDRIIKN IERGEARISR KDEIMRAIGK
KLDRYKNPWL ELKIQYGQNK GKFYNEECDR FMLCMVHKLG YGNWDELKAA FRMSPLFRFD
WFVKSRTTQE LARRCDTLIR LVEKENQEYD EQERQARKDK RMAKNMTPTK RSALRVSEGE
TTPSNSFKRR RQSLMDDYVG SGRRKRG
