JAL11_ARATH
ID JAL11_ARATH Reviewed; 444 AA.
AC Q5XF82; F4IB98; F4IB99; Q9ZU16;
DT 01-OCT-2014, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=Jacalin-related lectin 11;
GN Name=JAL11; OrderedLocusNames=At1g52100; ORFNames=F5F19.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RA Shinn P., Chen H., Cheuk R., Kim C.J., Ecker J.R.;
RT "Arabidopsis cDNA clones.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RA Shinn P., Chen H., Cheuk R., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA Hayashizaki Y., Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18467340; DOI=10.1093/pcp/pcn075;
RA Nagano A.J., Fukao Y., Fujiwara M., Nishimura M., Hara-Nishimura I.;
RT "Antagonistic jacalin-related lectins regulate the size of ER body-type
RT beta-glucosidase complexes in Arabidopsis thaliana.";
RL Plant Cell Physiol. 49:969-980(2008).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q5XF82-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q5XF82-2; Sequence=VSP_056714;
CC -!- SIMILARITY: Belongs to the jacalin lectin family. {ECO:0000255|PROSITE-
CC ProRule:PRU01088, ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD12684.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AEE32755.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC006216; AAD12684.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE32754.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32755.1; ALT_SEQ; Genomic_DNA.
DR EMBL; BT015734; AAU84671.1; -; mRNA.
DR EMBL; BT020176; AAV43778.1; -; mRNA.
DR EMBL; AK229056; BAF00938.1; -; mRNA.
DR PIR; H96560; H96560.
DR RefSeq; NP_001185202.1; NM_001198273.2.
DR RefSeq; NP_001323242.1; NM_001333527.1.
DR RefSeq; NP_175622.3; NM_104091.3. [Q5XF82-2]
DR AlphaFoldDB; Q5XF82; -.
DR SMR; Q5XF82; -.
DR BioGRID; 26865; 1.
DR IntAct; Q5XF82; 1.
DR STRING; 3702.AT1G52100.1; -.
DR iPTMnet; Q5XF82; -.
DR PaxDb; Q5XF82; -.
DR PeptideAtlas; Q5XF82; -.
DR PRIDE; Q5XF82; -.
DR ProteomicsDB; 232255; -. [Q5XF82-1]
DR EnsemblPlants; AT1G52100.1; AT1G52100.1; AT1G52100. [Q5XF82-2]
DR GeneID; 841640; -.
DR Gramene; AT1G52100.1; AT1G52100.1; AT1G52100. [Q5XF82-2]
DR KEGG; ath:AT1G52100; -.
DR Araport; AT1G52100; -.
DR TAIR; locus:2034001; AT1G52100.
DR HOGENOM; CLU_041730_0_0_1; -.
DR OMA; FGHESAC; -.
DR OrthoDB; 107737at2759; -.
DR PRO; PR:Q5XF82; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q5XF82; baseline and differential.
DR Genevisible; Q5XF82; AT.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR CDD; cd09612; Jacalin; 3.
DR Gene3D; 2.100.10.30; -; 3.
DR InterPro; IPR001229; Jacalin-like_lectin_dom.
DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant.
DR InterPro; IPR036404; Jacalin-like_lectin_dom_sf.
DR Pfam; PF01419; Jacalin; 3.
DR SMART; SM00915; Jacalin; 3.
DR SUPFAM; SSF51101; SSF51101; 3.
DR PROSITE; PS51752; JACALIN_LECTIN; 3.
PE 2: Evidence at transcript level;
KW Acetylation; Alternative splicing; Lectin; Reference proteome; Repeat.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000250|UniProtKB:Q9FGC5"
FT CHAIN 2..444
FT /note="Jacalin-related lectin 11"
FT /id="PRO_0000430378"
FT DOMAIN 2..143
FT /note="Jacalin-type lectin 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 146..290
FT /note="Jacalin-type lectin 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 298..442
FT /note="Jacalin-type lectin 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT MOD_RES 2
FT /note="N-acetylalanine"
FT /evidence="ECO:0000250|UniProtKB:Q9FGC5"
FT VAR_SEQ 362..369
FT /note="EFELDYPS -> D (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_056714"
SQ SEQUENCE 444 AA; 48524 MW; 9547A012467E3391 CRC64;
MALKVEAKGG KVGIQWDDGS DYHDVTKIYV RGGLEGIQFI KFEYVKAGKK VIGPIHGASG
RGFTETFEIN NLEKEYLLSI EGYYNASTGV IQCLQFITNK KTYDPIGYNE GARFTLSASR
SKIIGFHGFA DKYLNSLGAY FIKIPSIQSA IEGAKTTGKG FDDGGDYDGI RKVYVTTDGS
AIRHVRFDYD KAGQVETRER GAKTGTQHEF TVNHPYEYIT SVEGTYAHTQ PYNCVVLTSL
TFKTSKGRAS PAIGKVTGSK FKLERQGDAI VGFHGRVGSC IDGIGVYYAP LPPSPPPPEK
LQGQGGDGGD SWDDGAFKNV KKIYVGQGDV GIAAVKFEYE TYTSEVILAE RHGKETLLGY
EEFELDYPSE YITAVEGCHD KVIGSETGVI TMLRFKTNKR NSPPFGLESA FSFILEKDGH
KIVGFHGKAS TLLHQIGVHV TAIA
