JAL3_ARATH
ID JAL3_ARATH Reviewed; 601 AA.
AC F4HQX1; Q8W4L1; Q9FXH0;
DT 01-OCT-2014, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 65.
DE RecName: Full=Jacalin-related lectin 3;
DE AltName: Full=Mannose-binding lectin superfamily protein;
GN Name=JAL3; OrderedLocusNames=At1g19715; ORFNames=F6F9.23;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18467340; DOI=10.1093/pcp/pcn075;
RA Nagano A.J., Fukao Y., Fujiwara M., Nishimura M., Hara-Nishimura I.;
RT "Antagonistic jacalin-related lectins regulate the size of ER body-type
RT beta-glucosidase complexes in Arabidopsis thaliana.";
RL Plant Cell Physiol. 49:969-980(2008).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=F4HQX1-1; Sequence=Displayed;
CC Name=2;
CC IsoId=F4HQX1-2; Sequence=VSP_056711;
CC Name=3;
CC IsoId=F4HQX1-3; Sequence=VSP_056710;
CC -!- SIMILARITY: Belongs to the jacalin lectin family. {ECO:0000255|PROSITE-
CC ProRule:PRU01088, ECO:0000305}.
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DR EMBL; AC007797; AAG12566.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29888.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29889.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29890.1; -; Genomic_DNA.
DR EMBL; AY062497; AAL32575.1; -; mRNA.
DR EMBL; AY075593; AAL91614.1; -; mRNA.
DR EMBL; BT000110; AAN15429.1; -; mRNA.
DR PIR; B86330; B86330.
DR RefSeq; NP_001117315.1; NM_001123843.1. [F4HQX1-3]
DR RefSeq; NP_001185041.1; NM_001198112.1. [F4HQX1-1]
DR RefSeq; NP_849691.1; NM_179360.1. [F4HQX1-2]
DR AlphaFoldDB; F4HQX1; -.
DR SMR; F4HQX1; -.
DR STRING; 3702.AT1G19715.3; -.
DR PaxDb; F4HQX1; -.
DR PRIDE; F4HQX1; -.
DR ProteomicsDB; 250665; -. [F4HQX1-1]
DR EnsemblPlants; AT1G19715.1; AT1G19715.1; AT1G19715. [F4HQX1-2]
DR EnsemblPlants; AT1G19715.2; AT1G19715.2; AT1G19715. [F4HQX1-3]
DR EnsemblPlants; AT1G19715.3; AT1G19715.3; AT1G19715. [F4HQX1-1]
DR GeneID; 838560; -.
DR Gramene; AT1G19715.1; AT1G19715.1; AT1G19715. [F4HQX1-2]
DR Gramene; AT1G19715.2; AT1G19715.2; AT1G19715. [F4HQX1-3]
DR Gramene; AT1G19715.3; AT1G19715.3; AT1G19715. [F4HQX1-1]
DR KEGG; ath:AT1G19715; -.
DR Araport; AT1G19715; -.
DR TAIR; locus:1005716765; AT1G19715.
DR eggNOG; KOG4197; Eukaryota.
DR InParanoid; F4HQX1; -.
DR OMA; KQIYLTR; -.
DR OrthoDB; 309678at2759; -.
DR PRO; PR:F4HQX1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4HQX1; baseline and differential.
DR Genevisible; F4HQX1; AT.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR CDD; cd09612; Jacalin; 3.
DR Gene3D; 2.100.10.30; -; 3.
DR InterPro; IPR001229; Jacalin-like_lectin_dom.
DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant.
DR InterPro; IPR036404; Jacalin-like_lectin_dom_sf.
DR Pfam; PF01419; Jacalin; 3.
DR SMART; SM00915; Jacalin; 3.
DR SUPFAM; SSF51101; SSF51101; 3.
DR PROSITE; PS51752; JACALIN_LECTIN; 3.
PE 2: Evidence at transcript level;
KW Alternative splicing; Lectin; Reference proteome; Repeat.
FT CHAIN 1..601
FT /note="Jacalin-related lectin 3"
FT /id="PRO_0000430370"
FT DOMAIN 13..155
FT /note="Jacalin-type lectin 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 240..382
FT /note="Jacalin-type lectin 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 438..583
FT /note="Jacalin-type lectin 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT VAR_SEQ 1..30
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000305"
FT /id="VSP_056710"
FT VAR_SEQ 1..7
FT /note="MVLTSSY -> M (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_056711"
SQ SEQUENCE 601 AA; 65645 MW; 34332D94C89F23DD CRC64;
MVLTSSYSVE GKPASLGPWG GQSGHAWDDG MYTTVKQIII AHGSGIDSIQ IEYDKNGSSV
WSEKRGGKGG KKFDKVKFDY PHEYLISVNG TYGSFDVWGT ICVRSLTFES NRRKYGPFGV
DSGTFFALPK SGSKIIGFHG KAGWYLDAIG VHTQPIPKEN NPSSKILLHS HQSFSQGDKK
HEYSVLQGSV GQNFDIVVTL RKKDPTLPSF ESRDSAGAEV TKHKLVTDTE KSQSKIEGGA
KTYGPWGGTG GIMFDDGIYT GIRQINLSRN VGIVSMKVCY DFRGQAVWGS KHGGVGGFKH
DKIVFDYPSE VLTHVTGTYG PLMYMGPNVI KSLTFRTNRG KHGPYGEEQG PSFTHQMDEG
KVVGFLGREG LFLDSIGVHV MECKISSLKP SSPHNAIVPH NNSGTAQIEN SPWANKLVLA
ANGHGEEVDR GVVKEPTPSG PGPWGGDGGQ AWDDGVFSGI KQIFVTRGND AITSIQIEYD
RNGQSVWSIK HGGDSNGVAT HRIKFEYPDE SITCISGYYG PLNNSDRYNV VKSLSFYTSR
GRYGPYGEET GTFFTSTTTQ GKVLGFHGRS SFHLDAIGVH MQHWLGNNKS YYSRASCFKL
F
