JAL40_ARATH
ID JAL40_ARATH Reviewed; 453 AA.
AC Q9LKR6;
DT 01-OCT-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Jacalin-related lectin 40;
GN Name=JAL40; OrderedLocusNames=At5g28520; ORFNames=T26D3.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18467340; DOI=10.1093/pcp/pcn075;
RA Nagano A.J., Fukao Y., Fujiwara M., Nishimura M., Hara-Nishimura I.;
RT "Antagonistic jacalin-related lectins regulate the size of ER body-type
RT beta-glucosidase complexes in Arabidopsis thaliana.";
RL Plant Cell Physiol. 49:969-980(2008).
RN [5]
RP INDUCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Columbia;
RX PubMed=23341152; DOI=10.1007/s11103-013-0015-6;
RA Jia F., Rock C.D.;
RT "MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by
RT abscisic acid by alternative splicing in roots of Arabidopsis.";
RL Plant Mol. Biol. 81:447-460(2013).
RN [6]
RP INDUCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Columbia;
RX PubMed=23603955; DOI=10.4161/psb.24563;
RA Jia F., Rock C.D.;
RT "Jacalin lectin At5g28520 is regulated by ABA and miR846.";
RL Plant Signal. Behav. 8:E24563-E24563(2013).
CC -!- TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:23341152,
CC ECO:0000269|PubMed:23603955}.
CC -!- INDUCTION: Up-regulated by abscisic acid and abiotic stresses.
CC Regulated by the microRNA miR846. Abscisic acid represses also the
CC expression of miR846, thus increasing the accumulation of JAL40.
CC {ECO:0000269|PubMed:23341152, ECO:0000269|PubMed:23603955}.
CC -!- SIMILARITY: Belongs to the jacalin lectin family. {ECO:0000255|PROSITE-
CC ProRule:PRU01088, ECO:0000305}.
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DR EMBL; AF262043; AAF88016.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93810.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM68398.1; -; Genomic_DNA.
DR EMBL; DQ446994; ABE66186.1; -; mRNA.
DR RefSeq; NP_001330158.1; NM_001344072.1.
DR RefSeq; NP_198204.3; NM_122735.4.
DR AlphaFoldDB; Q9LKR6; -.
DR SMR; Q9LKR6; -.
DR STRING; 3702.AT5G28520.1; -.
DR PaxDb; Q9LKR6; -.
DR PRIDE; Q9LKR6; -.
DR EnsemblPlants; AT5G28520.1; AT5G28520.1; AT5G28520.
DR EnsemblPlants; AT5G28520.2; AT5G28520.2; AT5G28520.
DR GeneID; 832945; -.
DR Gramene; AT5G28520.1; AT5G28520.1; AT5G28520.
DR Gramene; AT5G28520.2; AT5G28520.2; AT5G28520.
DR KEGG; ath:AT5G28520; -.
DR Araport; AT5G28520; -.
DR TAIR; locus:2182773; AT5G28520.
DR HOGENOM; CLU_041730_0_0_1; -.
DR InParanoid; Q9LKR6; -.
DR OrthoDB; 287068at2759; -.
DR PhylomeDB; Q9LKR6; -.
DR PRO; PR:Q9LKR6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LKR6; baseline and differential.
DR Genevisible; Q9LKR6; AT.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
DR CDD; cd09612; Jacalin; 3.
DR Gene3D; 2.100.10.30; -; 3.
DR InterPro; IPR001229; Jacalin-like_lectin_dom.
DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant.
DR InterPro; IPR036404; Jacalin-like_lectin_dom_sf.
DR Pfam; PF01419; Jacalin; 3.
DR SMART; SM00915; Jacalin; 3.
DR SUPFAM; SSF51101; SSF51101; 3.
DR PROSITE; PS51752; JACALIN_LECTIN; 3.
PE 2: Evidence at transcript level;
KW Acetylation; Lectin; Reference proteome; Repeat.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000250|UniProtKB:Q9FGC5"
FT CHAIN 2..453
FT /note="Jacalin-related lectin 40"
FT /id="PRO_0000430397"
FT DOMAIN 1..142
FT /note="Jacalin-type lectin 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 154..296
FT /note="Jacalin-type lectin 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 306..449
FT /note="Jacalin-type lectin 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT MOD_RES 2
FT /note="N-acetylalanine"
FT /evidence="ECO:0000250|UniProtKB:Q9FGC5"
SQ SEQUENCE 453 AA; 50205 MW; D37A33D35371E172 CRC64;
MAQKLEAIGR GLQWDDSSDH DNVTKILVRG GREGIQYVKF DYVKSGQPQT GLIHGLSGRG
GFTQTFEIDQ KDEHLVSVEG YYDVTKGVIQ ALKFKTNKKT SEMIGYDDTG IKLSLEVKGK
KIIGFHGYAE TNLNSLGAYF TTTGPIGLNP QVGHIKLAYQ GGGGGIPWDH GPNHNGVKRV
SFIFDENEIR QWRVDYDDGG VIRQYEPING YDMFEVKEYP TEYIISVECT YDDVIPRSGR
RMIRSIMFKT SKGRVSPIFG YPAARKFVLE NNGGALIGFH GRVGAGIDAL GAYFSSFIPS
PPPPSPEKLQ PEGGEAVGDP WDDGIFNGVR EIHLEDGEGI ALKFVYDKDV QVTELKVHGE
PSGIGFNEFK LDYPSEYITT VEGFWDKTSG NERGVITRLR FTTNKQTFRP VGLESTTSFS
LGKEGYKIVG FHGNSSTDKL HQLGVYVVPI TRE
