JAL4_ARATH
ID JAL4_ARATH Reviewed; 745 AA.
AC Q9LQ31; F4HRA7; Q940R1;
DT 01-OCT-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 120.
DE RecName: Full=Jacalin-related lectin 4;
GN Name=JAL4; OrderedLocusNames=At1g33790; ORFNames=F14M2.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18467340; DOI=10.1093/pcp/pcn075;
RA Nagano A.J., Fukao Y., Fujiwara M., Nishimura M., Hara-Nishimura I.;
RT "Antagonistic jacalin-related lectins regulate the size of ER body-type
RT beta-glucosidase complexes in Arabidopsis thaliana.";
RL Plant Cell Physiol. 49:969-980(2008).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=Q9LQ31-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9LQ31-2; Sequence=VSP_056712;
CC Name=3;
CC IsoId=Q9LQ31-3; Sequence=VSP_056713;
CC -!- SIMILARITY: Belongs to the jacalin lectin family. {ECO:0000255|PROSITE-
CC ProRule:PRU01088, ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC010164; AAF97293.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31624.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31625.1; -; Genomic_DNA.
DR EMBL; AY054174; AAL06835.1; -; mRNA.
DR PIR; D86461; D86461.
DR RefSeq; NP_001154390.2; NM_001160918.3. [Q9LQ31-1]
DR RefSeq; NP_564427.1; NM_103098.2. [Q9LQ31-2]
DR AlphaFoldDB; Q9LQ31; -.
DR SMR; Q9LQ31; -.
DR BioGRID; 25503; 1.
DR PaxDb; Q9LQ31; -.
DR PRIDE; Q9LQ31; -.
DR ProteomicsDB; 238982; -. [Q9LQ31-1]
DR EnsemblPlants; AT1G33790.1; AT1G33790.1; AT1G33790. [Q9LQ31-2]
DR EnsemblPlants; AT1G33790.2; AT1G33790.2; AT1G33790. [Q9LQ31-1]
DR GeneID; 840271; -.
DR Gramene; AT1G33790.1; AT1G33790.1; AT1G33790. [Q9LQ31-2]
DR Gramene; AT1G33790.2; AT1G33790.2; AT1G33790. [Q9LQ31-1]
DR KEGG; ath:AT1G33790; -.
DR Araport; AT1G33790; -.
DR TAIR; locus:2012703; AT1G33790.
DR eggNOG; ENOG502SDKK; Eukaryota.
DR HOGENOM; CLU_334441_0_0_1; -.
DR InParanoid; Q9LQ31; -.
DR OMA; TSHELHQ; -.
DR OrthoDB; 107737at2759; -.
DR PhylomeDB; Q9LQ31; -.
DR PRO; PR:Q9LQ31; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LQ31; baseline and differential.
DR Genevisible; Q9LQ31; AT.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR CDD; cd09612; Jacalin; 5.
DR Gene3D; 2.100.10.30; -; 5.
DR InterPro; IPR001229; Jacalin-like_lectin_dom.
DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant.
DR InterPro; IPR036404; Jacalin-like_lectin_dom_sf.
DR Pfam; PF01419; Jacalin; 5.
DR SMART; SM00915; Jacalin; 5.
DR SUPFAM; SSF51101; SSF51101; 5.
DR PROSITE; PS51752; JACALIN_LECTIN; 5.
PE 2: Evidence at transcript level;
KW Alternative splicing; Lectin; Reference proteome; Repeat.
FT CHAIN 1..745
FT /note="Jacalin-related lectin 4"
FT /id="PRO_0000430371"
FT DOMAIN 2..148
FT /note="Jacalin-type lectin 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 151..294
FT /note="Jacalin-type lectin 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 307..448
FT /note="Jacalin-type lectin 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 451..594
FT /note="Jacalin-type lectin 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 601..744
FT /note="Jacalin-type lectin 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT VAR_SEQ 71..370
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_056712"
FT VAR_SEQ 98..397
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_056713"
FT CONFLICT 427
FT /note="K -> T (in Ref. 3; AAL06835)"
FT /evidence="ECO:0000305"
FT CONFLICT 436
FT /note="Q -> H (in Ref. 3; AAL06835)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 745 AA; 81843 MW; D65772851FC208BA CRC64;
MAQKLEAKGG KGGNQWDDLL DHDNIAKIHV QGGHEGIQYV KFDYVKFDNL KIGQPKLGSI
HGLSRKGFTQ TFEIDPTSEY IVSVEGYYDE SKGIIQALKF KTNKKTSDMI GYDENGLKFS
LEVKGKAIIG FHGFADTNLN SLGAYFAPAP PTKFDYQGGS GAQLWDDGSN YNGVRKVSFS
LDDTEIRQIR IEYDKSGLVE KREYGSNVGR QEEFVLDYPT EYIIYMEGTC DIVSDTSKNR
VRSLMFKTSK GRTSPIFGKV AARKFVFESN GSALIGFHGR AAAAVDAIGA YFSPLILSAP
APPPPPAEKL QAKGGNGGNQ WDDLADHDHV TKIYVQGGQE GIQYVKFDYV KNGQPQSGSV
HGLLGRGFTQ TFEIDPTNEH LVSVEGYYDE SKGLVQGLKF KTNKKTSDMI GYDENGLKFS
LEVNGKKIIG FHGYAQTYLN SLGAYFVTAP PTKFDYQGGS GAQLWDDGTN YNGVRKISFA
LDANEIRQIR IDYDKGGLIE RREYGGNVGR QEEFVVDYPS EYIIYMEGTC DIVSDASKNR
VRSLMFKTSK GRTSPIFGKV AARKFVFESN GSALIGFHGR AAAAVDAIGA YFSRFILPPS
AETLQAKGGE GGDPWSDGVF NGVRNIYVGQ GENGVSAVKF VYDKDSQVAE GNDHGKPTLL
GYEEFKLEYP SEYITTVEGC FDKIFGSGGG VITMLKFKTN KRTSPPFGLE TTSNFVLGKE
GYKIVGFHGT SSHELHQLGV YVMPI
