JAL6_ARATH
ID JAL6_ARATH Reviewed; 642 AA.
AC Q9SAV1; O23831; Q56Z10; Q9SSV0; Q9SXH0;
DT 11-JAN-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=Myrosinase-binding protein 2;
DE AltName: Full=Jacalin-related lectin 6;
DE AltName: Full=Myrosinase-binding protein-like At1g52030;
DE Short=MBP;
GN Name=F-ATMBP; Synonyms=JAL6, MBP2; OrderedLocusNames=At1g52030;
GN ORFNames=F5F19.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Flower bud;
RX PubMed=8980528; DOI=10.1007/bf00020217;
RA Utsugi S., Sakamoto W., Ogura Y., Murata M., Motoyoshi F.;
RT "Isolation and characterization of cDNA clones corresponding to the genes
RT expressed preferentially in floral organs of Arabidopsis thaliana.";
RL Plant Mol. Biol. 32:759-765(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY, AND INDUCTION.
RC STRAIN=cv. Columbia;
RX PubMed=10682349; DOI=10.1093/oxfordjournals.pcp.a029517;
RA Takechi K., Sakamoto W., Utsugi S., Murata M., Motoyoshi F.;
RT "Characterization of a flower-specific gene encoding a putative myrosinase
RT binding protein in Arabidopsis thaliana.";
RL Plant Cell Physiol. 40:1287-1296(1999).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 418-642.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP INDUCTION BY METHYL JASMONATE, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Columbia;
RX PubMed=11678272; DOI=10.1007/s004250100548;
RA Capella A.N., Menossi M., Arruda P., Benedetti C.E.;
RT "COI1 affects myrosinase activity and controls the expression of two
RT flower-specific myrosinase-binding protein homologues in Arabidopsis.";
RL Planta 213:691-699(2001).
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18467340; DOI=10.1093/pcp/pcn075;
RA Nagano A.J., Fukao Y., Fujiwara M., Nishimura M., Hara-Nishimura I.;
RT "Antagonistic jacalin-related lectins regulate the size of ER body-type
RT beta-glucosidase complexes in Arabidopsis thaliana.";
RL Plant Cell Physiol. 49:969-980(2008).
CC -!- TISSUE SPECIFICITY: Expressed in flowers. Detected mainly in ovules and
CC styles of immature flowers, but also in pistils, styles, stamens,
CC petals and embryos. Not detected in leaves.
CC {ECO:0000269|PubMed:10682349, ECO:0000269|PubMed:11678272}.
CC -!- INDUCTION: Not regulated by wounding, dehydration stress, methyl
CC jasmonate, salicylic acid or abscisic acid treatments.
CC {ECO:0000269|PubMed:10682349, ECO:0000269|PubMed:11678272}.
CC -!- SIMILARITY: Belongs to the jacalin lectin family. {ECO:0000255|PROSITE-
CC ProRule:PRU01088, ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA82151.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAA84545.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD95192.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; D85194; BAA22099.1; -; mRNA.
DR EMBL; AB027252; BAA82151.1; ALT_INIT; Genomic_RNA.
DR EMBL; AB032412; BAA84545.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC006216; AAD12677.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32747.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE32748.1; -; Genomic_DNA.
DR EMBL; AY039537; AAK62593.1; -; mRNA.
DR EMBL; BT002280; AAN72291.1; -; mRNA.
DR EMBL; AK221159; BAD95192.1; ALT_INIT; mRNA.
DR PIR; A96560; A96560.
DR RefSeq; NP_175615.1; NM_104084.4.
DR RefSeq; NP_849794.1; NM_179463.3.
DR AlphaFoldDB; Q9SAV1; -.
DR SMR; Q9SAV1; -.
DR BioGRID; 26857; 1.
DR STRING; 3702.AT1G52030.2; -.
DR PaxDb; Q9SAV1; -.
DR PRIDE; Q9SAV1; -.
DR ProteomicsDB; 232293; -.
DR EnsemblPlants; AT1G52030.1; AT1G52030.1; AT1G52030.
DR EnsemblPlants; AT1G52030.2; AT1G52030.2; AT1G52030.
DR GeneID; 841632; -.
DR Gramene; AT1G52030.1; AT1G52030.1; AT1G52030.
DR Gramene; AT1G52030.2; AT1G52030.2; AT1G52030.
DR KEGG; ath:AT1G52030; -.
DR Araport; AT1G52030; -.
DR TAIR; locus:2034081; AT1G52030.
DR eggNOG; ENOG502SCUZ; Eukaryota.
DR HOGENOM; CLU_019384_2_1_1; -.
DR InParanoid; Q9SAV1; -.
DR OMA; RGWMAST; -.
DR OrthoDB; 858863at2759; -.
DR PhylomeDB; Q9SAV1; -.
DR PRO; PR:Q9SAV1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SAV1; baseline and differential.
DR Genevisible; Q9SAV1; AT.
DR GO; GO:0010169; C:thioglucosidase complex; ISS:TAIR.
DR GO; GO:0030246; F:carbohydrate binding; TAS:TAIR.
DR GO; GO:0010180; F:thioglucosidase binding; ISS:TAIR.
DR GO; GO:0007155; P:cell adhesion; TAS:TAIR.
DR GO; GO:0006952; P:defense response; TAS:TAIR.
DR GO; GO:0009908; P:flower development; TAS:TAIR.
DR GO; GO:0009611; P:response to wounding; IEP:TAIR.
DR CDD; cd09612; Jacalin; 4.
DR Gene3D; 2.100.10.30; -; 4.
DR InterPro; IPR001229; Jacalin-like_lectin_dom.
DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant.
DR InterPro; IPR036404; Jacalin-like_lectin_dom_sf.
DR Pfam; PF01419; Jacalin; 4.
DR SMART; SM00915; Jacalin; 4.
DR SUPFAM; SSF51101; SSF51101; 4.
DR PROSITE; PS51752; JACALIN_LECTIN; 4.
PE 2: Evidence at transcript level;
KW Lectin; Reference proteome; Repeat.
FT CHAIN 1..642
FT /note="Myrosinase-binding protein 2"
FT /id="PRO_0000072790"
FT DOMAIN 2..151
FT /note="Jacalin-type lectin 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 156..291
FT /note="Jacalin-type lectin 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 334..477
FT /note="Jacalin-type lectin 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT DOMAIN 490..633
FT /note="Jacalin-type lectin 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01088"
FT REGION 296..338
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 479..499
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 296..334
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 479..496
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 21
FT /note="F -> L (in Ref. 1; BAA22099)"
FT /evidence="ECO:0000305"
FT CONFLICT 89
FT /note="A -> T (in Ref. 1; BAA22099)"
FT /evidence="ECO:0000305"
FT CONFLICT 290
FT /note="A -> G (in Ref. 1; BAA22099)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 642 AA; 68849 MW; 9AB0B569A65C913C CRC64;
MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ
LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY GRTSPILGHT TLLGNPAGKE
FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK
VLVGRNGKFV SYVRFEYAKG ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS
LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY
IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE SDDYITSIEV SVDNVFGFKS
EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN
STTPSTPSTS KKLQARGGNG GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG
DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF
