JAMYB_ORYSJ
ID JAMYB_ORYSJ Reviewed; 285 AA.
AC Q2QZJ8; Q0IR36; Q9ARI8;
DT 10-MAY-2017, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 131.
DE RecName: Full=Transcription factor JAMYB {ECO:0000305};
DE AltName: Full=OsJAMyb {ECO:0000303|PubMed:11310740};
GN Name=JAMYB {ECO:0000303|PubMed:11310740};
GN OrderedLocusNames=Os11g0684000 {ECO:0000312|EMBL:BAF28829.2},
GN LOC_Os11g45740 {ECO:0000312|EMBL:ABA95299.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND INDUCTION.
RX PubMed=11310740; DOI=10.1094/mpmi.2001.14.4.527;
RA Lee M.W., Qi M., Yang Y.;
RT "A novel jasmonic acid-inducible rice myb gene associates with fungal
RT infection and host cell death.";
RL Mol. Plant Microbe Interact. 14:527-535(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Probable transcription factor that may be involved in the
CC jasmonate-dependent defense responses to the rice blast fungus
CC Magnaporthe oryzae. Does not seem to function in the salicylic acid-
CC dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- INDUCTION: Induced by jasmonate (JA), wounding and infection by the
CC fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
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DR EMBL; AY026332; AAK08983.1; -; mRNA.
DR EMBL; DP000010; ABA95299.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF28829.2; -; Genomic_DNA.
DR EMBL; AP014967; BAT15264.1; -; Genomic_DNA.
DR RefSeq; XP_015618000.1; XM_015762514.1.
DR AlphaFoldDB; Q2QZJ8; -.
DR SMR; Q2QZJ8; -.
DR STRING; 4530.OS11T0684000-01; -.
DR PaxDb; Q2QZJ8; -.
DR PRIDE; Q2QZJ8; -.
DR EnsemblPlants; Os11t0684000-01; Os11t0684000-01; Os11g0684000.
DR GeneID; 4351131; -.
DR Gramene; Os11t0684000-01; Os11t0684000-01; Os11g0684000.
DR KEGG; osa:4351131; -.
DR eggNOG; KOG0048; Eukaryota.
DR HOGENOM; CLU_028567_8_2_1; -.
DR InParanoid; Q2QZJ8; -.
DR OMA; MMNNEND; -.
DR OrthoDB; 1338971at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR CDD; cd00167; SANT; 2.
DR InterPro; IPR044676; EOBI/EOBII-like_plant.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR PANTHER; PTHR45675; PTHR45675; 1.
DR Pfam; PF00249; Myb_DNA-binding; 2.
DR SMART; SM00717; SANT; 2.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51294; HTH_MYB; 2.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Plant defense; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..285
FT /note="Transcription factor JAMYB"
FT /id="PRO_0000439822"
FT DOMAIN 26..78
FT /note="HTH myb-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DOMAIN 79..133
FT /note="HTH myb-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 54..78
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 106..129
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
SQ SEQUENCE 285 AA; 32783 MW; 546E764AA3CA1D46 CRC64;
MEMVLQRTSH HPVPGEQQEA AAELSSAELR RGPWTVDEDL TLINYISDHG EGRWNALARA
AGLKRTGKSC RLRWLNYLRP DVKRGNFTAE EQLLILDLHS RWGNRWSKIA QHLPGRTDNE
IKNYWRTRVQ KHAKQLNCDV NSKRFKDAMK YLWMPRLAER IHARAGAVDD SGDYSNNDLS
CVSGVTMATV ANCFDGSPSM VTSSSSDSFT SESQDLKKIN LHVHGDDEKM NSEDWMQEVD
HEFWSTEIQP NNEQFQDQQL NGWVQGFSEG LSETLWSLED IWKMQ
