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KC13_YEAST
ID   KC13_YEAST              Reviewed;         524 AA.
AC   P39962; D3DM29;
DT   01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1995, sequence version 2.
DT   03-AUG-2022, entry version 193.
DE   RecName: Full=Casein kinase I homolog 3;
DE            EC=2.7.11.1;
GN   Name=YCK3; Synonyms=CKI3; OrderedLocusNames=YER123W;
OS   Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Saccharomycetaceae; Saccharomyces.
OX   NCBI_TaxID=559292;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX   PubMed=8816449; DOI=10.1128/mcb.16.10.5375;
RA   Wang X., Hoekstra M.F., Demaggio A.J., Dhillon N., Vancura A., Kuret J.,
RA   Johnston G.C., Singer R.A.;
RT   "Prenylated isoforms of yeast casein kinase I, including the novel Yck3p,
RT   suppress the gcs1 blockage of cell proliferation from stationary phase.";
RL   Mol. Cell. Biol. 16:5375-5385(1996).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 204508 / S288c;
RX   PubMed=9169868;
RA   Dietrich F.S., Mulligan J.T., Hennessy K.M., Yelton M.A., Allen E.,
RA   Araujo R., Aviles E., Berno A., Brennan T., Carpenter J., Chen E.,
RA   Cherry J.M., Chung E., Duncan M., Guzman E., Hartzell G., Hunicke-Smith S.,
RA   Hyman R.W., Kayser A., Komp C., Lashkari D., Lew H., Lin D., Mosedale D.,
RA   Nakahara K., Namath A., Norgren R., Oefner P., Oh C., Petel F.X.,
RA   Roberts D., Sehl P., Schramm S., Shogren T., Smith V., Taylor P., Wei Y.,
RA   Botstein D., Davis R.W.;
RT   "The nucleotide sequence of Saccharomyces cerevisiae chromosome V.";
RL   Nature 387:78-81(1997).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=ATCC 204508 / S288c;
RX   PubMed=24374639; DOI=10.1534/g3.113.008995;
RA   Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
RA   Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
RA   Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.;
RT   "The reference genome sequence of Saccharomyces cerevisiae: Then and now.";
RL   G3 (Bethesda) 4:389-398(2014).
RN   [4]
RP   LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
RX   PubMed=14562106; DOI=10.1038/nature02046;
RA   Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N.,
RA   O'Shea E.K., Weissman J.S.;
RT   "Global analysis of protein expression in yeast.";
RL   Nature 425:737-741(2003).
RN   [5]
RP   PALMITOYLATION AT CYS-517; CYS-518; CYS-519; CYS-520; CYS-522; CYS-523 AND
RP   CYS-524, TARGETING SIGNAL, AND MUTAGENESIS OF TYR-444; SER-446 AND ILE-447.
RX   PubMed=14668479; DOI=10.1091/mbc.e03-09-0682;
RA   Sun B., Chen L., Cao W., Roth A.F., Davis N.G.;
RT   "The yeast casein kinase Yck3p is palmitoylated, then sorted to the
RT   vacuolar membrane with AP-3-dependent recognition of a YXXPhi adaptin
RT   sorting signal.";
RL   Mol. Biol. Cell 15:1397-1406(2004).
RN   [6]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=17287358; DOI=10.1073/pnas.0607084104;
RA   Chi A., Huttenhower C., Geer L.Y., Coon J.J., Syka J.E.P., Bai D.L.,
RA   Shabanowitz J., Burke D.J., Troyanskaya O.G., Hunt D.F.;
RT   "Analysis of phosphorylation sites on proteins from Saccharomyces
RT   cerevisiae by electron transfer dissociation (ETD) mass spectrometry.";
RL   Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007).
RN   [7]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=19779198; DOI=10.1126/science.1172867;
RA   Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.;
RT   "Global analysis of Cdk1 substrate phosphorylation sites provides insights
RT   into evolution.";
RL   Science 325:1682-1686(2009).
CC   -!- FUNCTION: Casein kinases are operationally defined by their
CC       preferential utilization of acidic proteins such as caseins as
CC       substrates.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-
CC         [protein]; Xref=Rhea:RHEA:17989, Rhea:RHEA-COMP:9863, Rhea:RHEA-
CC         COMP:11604, ChEBI:CHEBI:15378, ChEBI:CHEBI:29999, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:83421, ChEBI:CHEBI:456216; EC=2.7.11.1;
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-
CC         threonyl-[protein]; Xref=Rhea:RHEA:46608, Rhea:RHEA-COMP:11060,
CC         Rhea:RHEA-COMP:11605, ChEBI:CHEBI:15378, ChEBI:CHEBI:30013,
CC         ChEBI:CHEBI:30616, ChEBI:CHEBI:61977, ChEBI:CHEBI:456216;
CC         EC=2.7.11.1;
CC   -!- SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor; Cytoplasmic side.
CC       Nucleus membrane; Lipid-anchor; Cytoplasmic side. Vacuole membrane;
CC       Lipid-anchor; Cytoplasmic side. Note=Targeting to the vacuolar membrane
CC       may depend on AP-3 pathway.
CC   -!- DOMAIN: The YXXZ (Tyr-Xaa-Xaa-Zaa, where Zaa is a hydrophobic residue)
CC       motif mediates the targeting to the lysosomal compartments.
CC   -!- MISCELLANEOUS: Present with 1320 molecules/cell in log phase SD medium.
CC       {ECO:0000269|PubMed:14562106}.
CC   -!- SIMILARITY: Belongs to the protein kinase superfamily. CK1 Ser/Thr
CC       protein kinase family. Casein kinase I subfamily. {ECO:0000305}.
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DR   EMBL; X87108; CAA60589.1; -; Genomic_DNA.
DR   EMBL; U18916; AAC03221.2; -; Genomic_DNA.
DR   EMBL; BK006939; DAA07783.1; -; Genomic_DNA.
DR   PIR; S50626; S50626.
DR   RefSeq; NP_011049.2; NM_001179013.1.
DR   AlphaFoldDB; P39962; -.
DR   SMR; P39962; -.
DR   BioGRID; 36867; 176.
DR   DIP; DIP-6331N; -.
DR   IntAct; P39962; 6.
DR   MINT; P39962; -.
DR   STRING; 4932.YER123W; -.
DR   iPTMnet; P39962; -.
DR   SwissPalm; P39962; -.
DR   MaxQB; P39962; -.
DR   PaxDb; P39962; -.
DR   PRIDE; P39962; -.
DR   TopDownProteomics; P39962; -.
DR   EnsemblFungi; YER123W_mRNA; YER123W; YER123W.
DR   GeneID; 856860; -.
DR   KEGG; sce:YER123W; -.
DR   SGD; S000000925; YCK3.
DR   VEuPathDB; FungiDB:YER123W; -.
DR   eggNOG; KOG1165; Eukaryota.
DR   GeneTree; ENSGT00940000176388; -.
DR   HOGENOM; CLU_019279_1_0_1; -.
DR   InParanoid; P39962; -.
DR   OMA; FEWCGRK; -.
DR   BioCyc; YEAST:YER123W-MON; -.
DR   BRENDA; 2.7.11.1; 984.
DR   PRO; PR:P39962; -.
DR   Proteomes; UP000002311; Chromosome V.
DR   RNAct; P39962; protein.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0000324; C:fungal-type vacuole; IDA:SGD.
DR   GO; GO:0000329; C:fungal-type vacuole membrane; IDA:SGD.
DR   GO; GO:0031965; C:nuclear membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005634; C:nucleus; IDA:SGD.
DR   GO; GO:0005886; C:plasma membrane; IDA:SGD.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0004672; F:protein kinase activity; HDA:SGD.
DR   GO; GO:0106310; F:protein serine kinase activity; IEA:RHEA.
DR   GO; GO:0004674; F:protein serine/threonine kinase activity; ISS:SGD.
DR   GO; GO:0006897; P:endocytosis; IBA:GO_Central.
DR   GO; GO:0018105; P:peptidyl-serine phosphorylation; IBA:GO_Central.
DR   GO; GO:0007165; P:signal transduction; IBA:GO_Central.
DR   GO; GO:0016192; P:vesicle-mediated transport; IMP:SGD.
DR   InterPro; IPR011009; Kinase-like_dom_sf.
DR   InterPro; IPR000719; Prot_kinase_dom.
DR   InterPro; IPR008271; Ser/Thr_kinase_AS.
DR   Pfam; PF00069; Pkinase; 1.
DR   SMART; SM00220; S_TKc; 1.
DR   SUPFAM; SSF56112; SSF56112; 1.
DR   PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
DR   PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
PE   1: Evidence at protein level;
KW   ATP-binding; Cell membrane; Kinase; Lipoprotein; Membrane;
KW   Nucleotide-binding; Nucleus; Palmitate; Reference proteome;
KW   Serine/threonine-protein kinase; Transferase; Vacuole.
FT   CHAIN           1..524
FT                   /note="Casein kinase I homolog 3"
FT                   /id="PRO_0000192858"
FT   DOMAIN          14..319
FT                   /note="Protein kinase"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00159"
FT   REGION          352..414
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          427..474
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           444..447
FT                   /note="YXXZ targeting signal"
FT   COMPBIAS        357..414
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   ACT_SITE        150
FT                   /note="Proton acceptor"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00159,
FT                   ECO:0000255|PROSITE-ProRule:PRU10027"
FT   BINDING         20..28
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00159"
FT   BINDING         60
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00159"
FT   LIPID           517
FT                   /note="S-palmitoyl cysteine"
FT                   /evidence="ECO:0000305|PubMed:14668479"
FT   LIPID           518
FT                   /note="S-palmitoyl cysteine"
FT                   /evidence="ECO:0000305|PubMed:14668479"
FT   LIPID           519
FT                   /note="S-palmitoyl cysteine"
FT                   /evidence="ECO:0000305|PubMed:14668479"
FT   LIPID           520
FT                   /note="S-palmitoyl cysteine"
FT                   /evidence="ECO:0000305|PubMed:14668479"
FT   LIPID           522
FT                   /note="S-palmitoyl cysteine"
FT                   /evidence="ECO:0000305|PubMed:14668479"
FT   LIPID           523
FT                   /note="S-palmitoyl cysteine"
FT                   /evidence="ECO:0000305|PubMed:14668479"
FT   LIPID           524
FT                   /note="S-palmitoyl cysteine"
FT                   /evidence="ECO:0000305|PubMed:14668479"
FT   MUTAGEN         444
FT                   /note="Y->H: Impaired vacuolar targeting."
FT                   /evidence="ECO:0000269|PubMed:14668479"
FT   MUTAGEN         446
FT                   /note="S->P: Impaired vacuolar targeting."
FT                   /evidence="ECO:0000269|PubMed:14668479"
FT   MUTAGEN         447
FT                   /note="I->N: Impaired vacuolar targeting."
FT                   /evidence="ECO:0000269|PubMed:14668479"
SQ   SEQUENCE   524 AA;  60261 MW;  FD4BBA311D0CD805 CRC64;
     MSQRSSQHIV GIHYAVGPKI GEGSFGVIFE GENILHSCQA QTGSKRDSSI IMANEPVAIK
     FEPRHSDAPQ LRDEFRAYRI LNGCVGIPHA YYFGQEGMHN ILIIDLLGPS LEDLFEWCGR
     KFSVKTTCMV AKQMIDRVRA IHDHDLIYRD IKPDNFLISQ YQRISPEGKV IKSCASSSNN
     DPNLIYMVDF GMAKQYRDPR TKQHIPYRER KSLSGTARYM SINTHFGREQ SRRDDLESLG
     HVFFYFLRGS LPWQGLKAPN NKLKYEKIGM TKQKLNPDDL LLNNAIPYQF ATYLKYARSL
     KFDEDPDYDY LISLMDDALR LNDLKDDGHY DWMDLNGGKG WNIKINRRAN LHGYGNPNPR
     VNGNTARNNV NTNSKTRNTT PVATPKQQAQ NSYNKDNSKS RISSNPQSFT KQQHVLKKIE
     PNSKYIPETH SNLQRPIKSQ SQTYDSISHT QNSPFVPYSS SKANPKRSNN EHNLPNHYTN
     LANKNINYQS QRNYEQENDA YSDDENDTFC SKIYKYCCCC FCCC
 
 
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