KDC_MYCLE
ID KDC_MYCLE Reviewed; 569 AA.
AC Q9CBD6;
DT 20-MAY-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Alpha-keto-acid decarboxylase;
DE Short=KDC;
DE EC=4.1.1.-;
GN Name=kdc; OrderedLocusNames=ML2167;
OS Mycobacterium leprae (strain TN).
OC Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
OC Mycobacterium.
OX NCBI_TaxID=272631;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TN;
RX PubMed=11234002; DOI=10.1038/35059006;
RA Cole S.T., Eiglmeier K., Parkhill J., James K.D., Thomson N.R.,
RA Wheeler P.R., Honore N., Garnier T., Churcher C.M., Harris D.E.,
RA Mungall K.L., Basham D., Brown D., Chillingworth T., Connor R.,
RA Davies R.M., Devlin K., Duthoy S., Feltwell T., Fraser A., Hamlin N.,
RA Holroyd S., Hornsby T., Jagels K., Lacroix C., Maclean J., Moule S.,
RA Murphy L.D., Oliver K., Quail M.A., Rajandream M.A., Rutherford K.M.,
RA Rutter S., Seeger K., Simon S., Simmonds M., Skelton J., Squares R.,
RA Squares S., Stevens K., Taylor K., Whitehead S., Woodward J.R.,
RA Barrell B.G.;
RT "Massive gene decay in the leprosy bacillus.";
RL Nature 409:1007-1011(2001).
CC -!- FUNCTION: Decarboxylates branched-chain and aromatic alpha-keto acids
CC to aldehydes.
CC -!- COFACTOR:
CC Name=a metal cation; Xref=ChEBI:CHEBI:25213; Evidence={ECO:0000250};
CC Note=Binds 1 metal ion per subunit. {ECO:0000250};
CC -!- COFACTOR:
CC Name=thiamine diphosphate; Xref=ChEBI:CHEBI:58937;
CC Evidence={ECO:0000250};
CC Note=Binds 1 thiamine pyrophosphate per subunit. {ECO:0000250};
CC -!- SIMILARITY: Belongs to the TPP enzyme family. {ECO:0000305}.
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DR EMBL; AL583924; CAC31122.1; -; Genomic_DNA.
DR PIR; B87180; B87180.
DR RefSeq; NP_302424.1; NC_002677.1.
DR RefSeq; WP_010908744.1; NC_002677.1.
DR AlphaFoldDB; Q9CBD6; -.
DR SMR; Q9CBD6; -.
DR EnsemblBacteria; CAC31122; CAC31122; CAC31122.
DR KEGG; mle:ML2167; -.
DR PATRIC; fig|272631.5.peg.4107; -.
DR Leproma; ML2167; -.
DR eggNOG; COG3961; Bacteria.
DR HOGENOM; CLU_013748_0_2_11; -.
DR OMA; EQRYNDI; -.
DR Proteomes; UP000000806; Chromosome.
DR GO; GO:0016831; F:carboxy-lyase activity; IEA:UniProtKB-KW.
DR GO; GO:0000287; F:magnesium ion binding; IEA:InterPro.
DR GO; GO:0030976; F:thiamine pyrophosphate binding; IEA:InterPro.
DR InterPro; IPR029035; DHS-like_NAD/FAD-binding_dom.
DR InterPro; IPR029061; THDP-binding.
DR InterPro; IPR012000; Thiamin_PyroP_enz_cen_dom.
DR InterPro; IPR012001; Thiamin_PyroP_enz_TPP-bd_dom.
DR InterPro; IPR012110; TPP_enzyme.
DR InterPro; IPR011766; TPP_enzyme-bd_C.
DR PANTHER; PTHR43452; PTHR43452; 1.
DR Pfam; PF02775; TPP_enzyme_C; 1.
DR Pfam; PF00205; TPP_enzyme_M; 1.
DR Pfam; PF02776; TPP_enzyme_N; 1.
DR PIRSF; PIRSF036565; Pyruvt_ip_decrb; 1.
DR SUPFAM; SSF52467; SSF52467; 1.
DR SUPFAM; SSF52518; SSF52518; 2.
PE 3: Inferred from homology;
KW Decarboxylase; Lyase; Magnesium; Metal-binding; Reference proteome;
KW Thiamine pyrophosphate.
FT CHAIN 1..569
FT /note="Alpha-keto-acid decarboxylase"
FT /id="PRO_0000333748"
FT REGION 392..474
FT /note="Thiamine pyrophosphate binding"
FT /evidence="ECO:0000250"
FT BINDING 57
FT /ligand="thiamine diphosphate"
FT /ligand_id="ChEBI:CHEBI:58937"
FT /evidence="ECO:0000250"
FT BINDING 442
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000250"
FT BINDING 469
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000250"
FT BINDING 471
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /evidence="ECO:0000250"
SQ SEQUENCE 569 AA; 61146 MW; 5F791EC735254165 CRC64;
MTAPKIEAVY TVGAYLLDRL AELGVTEIFG VPGDYTLEFL DHIVAHPTIR WVGNANELNA
GYAADGYGRL RGISALVTTF GVGELSAANA IAGSYAEHVP VVHIVGAPPK DAQSTHRALH
HSLGDGDFEH FIRISSEITC SQANLTTATA CKEIDRVLSE VRKHKRPGYI LLSTDVARFP
TEPPAAPLPG HTDGTSPRAL SLFIDAATKL IADKRMTVLA DLLVHRLQVV KELETLLTAD
VVPYATLMWG KSLLDESSPN FLGIYAGAAS TEAVRAAIEQ APVLVTAGVV FTDMVSGFFS
QRIDPARTID VGQYQSSVAD KVFTPLEMGD ALEALASILV RRGVSSPPVE LPPGNPTADT
PSPTQRLTQQ ILWDRLCAAL TPGNVVLADQ GTAFYGMVEH RLPRGVTFIG QPLWGSIGYT
LPAALGAGLA HRNRRTVLLL GDGAAQLTIQ ELGSFYREGL SPVIVVVNND GYTIERAIHG
ATAPYNNIAR WRWTDIPGAL GVANHSSFRA ETYGELDEAF AVAAELKDQM VFVEVIVPKL
DLPSLLTALT RPAQDSNRIF QLPNPGWDN