KN13A_ORYSJ
ID KN13A_ORYSJ Reviewed; 819 AA.
AC B9FMJ3; Q0DKM5; Q60F22;
DT 07-SEP-2016, integrated into UniProtKB/Swiss-Prot.
DT 24-MAR-2009, sequence version 1.
DT 03-AUG-2022, entry version 80.
DE RecName: Full=Kinesin-like protein KIN-13A {ECO:0000305};
DE AltName: Full=Protein SMALL AND ROUND SEED 3 {ECO:0000303|PubMed:18089549};
GN Name=KIN13A {ECO:0000305}; Synonyms=SRS3 {ECO:0000312|EMBL:BAJ07191.1};
GN OrderedLocusNames=Os05g0154700 {ECO:0000312|EMBL:BAS92345.1},
GN LOC_Os05g06280 {ECO:0000305};
GN ORFNames=OsJ_17169 {ECO:0000312|EMBL:EEE62380.1},
GN OSJNBa0059G01.13 {ECO:0000312|EMBL:AAV31326.1},
GN P0431G05.2 {ECO:0000312|EMBL:AAV32215.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], MUTAGENESIS OF LEU-492, SUBCELLULAR LOCATION,
RP TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Taichung 65;
RX PubMed=20587735; DOI=10.1093/pcp/pcq092;
RA Kitagawa K., Kurinami S., Oki K., Abe Y., Ando T., Kono I., Yano M.,
RA Kitano H., Iwasaki Y.;
RT "A novel kinesin 13 protein regulating rice seed length.";
RL Plant Cell Physiol. 51:1315-1329(2010).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 354-819.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19106179; DOI=10.1093/aob/mcn248;
RA Guo L., Ho C.M., Kong Z., Lee Y.R., Qian Q., Liu B.;
RT "Evaluating the microtubule cytoskeleton and its interacting proteins in
RT monocots by mining the rice genome.";
RL Ann. Bot. 103:387-402(2009).
CC -!- SUBCELLULAR LOCATION: Microsome {ECO:0000269|PubMed:20587735}.
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:20587735}.
CC -!- DEVELOPMENTAL STAGE: Highly expressed in developing organs.
CC {ECO:0000269|PubMed:20587735}.
CC -!- SIMILARITY: Belongs to the TRAFAC class myosin-kinesin ATPase
CC superfamily. Kinesin family. KIN-13 subfamily.
CC {ECO:0000303|PubMed:19106179}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAV31326.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAV32215.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF16598.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS92345.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB531488; BAJ07191.1; -; mRNA.
DR EMBL; AC087551; AAV32215.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC093492; AAV31326.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008211; BAF16598.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014961; BAS92345.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000142; EEE62380.1; -; Genomic_DNA.
DR EMBL; AK064328; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015639990.1; XM_015784504.1.
DR AlphaFoldDB; B9FMJ3; -.
DR SMR; B9FMJ3; -.
DR STRING; 4530.OS05T0154700-01; -.
DR PRIDE; B9FMJ3; -.
DR EnsemblPlants; Os05t0154700-01; Os05t0154700-01; Os05g0154700.
DR GeneID; 4337845; -.
DR Gramene; Os05t0154700-01; Os05t0154700-01; Os05g0154700.
DR KEGG; osa:4337845; -.
DR eggNOG; KOG0246; Eukaryota.
DR OrthoDB; 418348at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR GO; GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-KW.
DR GO; GO:0005795; C:Golgi stack; IEA:EnsemblPlants.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IDA:UniProtKB.
DR GO; GO:0005874; C:microtubule; IBA:GO_Central.
DR GO; GO:0009531; C:secondary cell wall; IEA:EnsemblPlants.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0008017; F:microtubule binding; IEA:InterPro.
DR GO; GO:0003777; F:microtubule motor activity; IBA:GO_Central.
DR GO; GO:0090058; P:metaxylem development; IEA:EnsemblPlants.
DR GO; GO:0007019; P:microtubule depolymerization; IBA:GO_Central.
DR GO; GO:0007018; P:microtubule-based movement; IEA:InterPro.
DR GO; GO:0009834; P:plant-type secondary cell wall biogenesis; IEA:EnsemblPlants.
DR GO; GO:1903338; P:regulation of cell wall organization or biogenesis; IMP:UniProtKB.
DR GO; GO:0010090; P:trichome morphogenesis; IEA:EnsemblPlants.
DR Gene3D; 3.40.850.10; -; 1.
DR InterPro; IPR019821; Kinesin_motor_CS.
DR InterPro; IPR001752; Kinesin_motor_dom.
DR InterPro; IPR036961; Kinesin_motor_dom_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR Pfam; PF00225; Kinesin; 1.
DR PRINTS; PR00380; KINESINHEAVY.
DR SMART; SM00129; KISc; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS00411; KINESIN_MOTOR_1; 1.
DR PROSITE; PS50067; KINESIN_MOTOR_2; 1.
PE 1: Evidence at protein level;
KW ATP-binding; Coiled coil; Endoplasmic reticulum; Microsome; Microtubule;
KW Motor protein; Nucleotide-binding; Reference proteome.
FT CHAIN 1..819
FT /note="Kinesin-like protein KIN-13A"
FT /id="PRO_0000437200"
FT DOMAIN 199..535
FT /note="Kinesin motor"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00283"
FT REGION 150..178
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 534..729
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 736..767
FT /evidence="ECO:0000255"
FT COMPBIAS 539..564
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 587..619
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 634..656
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 658..682
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 691..721
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 289..296
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00283"
FT MUTAGEN 492
FT /note="L->F: In srs3: Small and round seed. Shortened
FT panicles and internodes."
FT /evidence="ECO:0000269|PubMed:20587735"
FT CONFLICT 735
FT /note="I -> V (in Ref. 7; AK064328)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 819 AA; 90462 MW; 6F1736CED11F5529 CRC64;
MGDSGDAVMA RWLQSAGLQH LAASSTSSSS ASTAGGGVDP RGGGGVGVGA LGGGAGGGSL
LPSLLMQGYG PQSIEEKQRL YMLLRSLNFN GETAPPSISE PYTPTAQSFG GGNSLEGFYS
PELRGELGAG LLDLHAMDDT ELLSEDVASE PFEPSPFIPK EMDEDDDDML PGSQPGPSDN
YNAVANEKES TARENNVAKI KVVVRKRPLN RKEVSRKEED IITVHDSSSL TVYEPKLKVD
LTAYVEKHEF CFDAVLDEQV SNDEVYRETV EPIIPIIFQR TKATCFAYGQ TGSGKTYTMQ
PLPLRAAQDM VRLLHQPVYR NQNFKLWLSY FEIYGGKLFD LLSDRRQLLM REDGKKQVCI
VGLQEFEVSD VQIVKEYIER GNAARSTGST GANEESSRSH AILQLAIKKH IIVTDTRRQR
DRDANESKNT KAVGKISFID LAGSERGADT TDNDRQTRIE GAEINKSLLA LKECIRALDN
DQIHIPFRGS KLTEVLRDSF VGNSRTVMIS CISPNAGSCE HTLNTLRYAD RVKSLSKGSN
TRKEQPTGPT IPSSKDSSSA PSYPMPIETE EIANQIQEKR PVETSRKAAE NFTSNSSMEP
DRNPVSMIPS YSNRGKEENG SSGLNDRERV DLNSSRISYN SKPQSVQSSA NLQEEEKVTK
VSPPRRKAYR DDKPERQSNY AKKDSGPETS RPGYKVQQAK QLQQQQRPTS ASASQNSSRQ
SEKESSCDDV EIDAILEEEE ALIAAHRKEI ENTMEIVREE MNLLAEVDQP GSLIDNYVTQ
LSFLLSRKAA GLVSLQARLA RFQHRLKEQE ILSRKKSSR
