位置:首页 > 蛋白库 > KNOS1_ORYSJ
KNOS1_ORYSJ
ID   KNOS1_ORYSJ             Reviewed;         301 AA.
AC   Q9FP29; A0A0P0V1U2; Q9SXM8; Q9XIV6;
DT   20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2001, sequence version 1.
DT   03-AUG-2022, entry version 127.
DE   RecName: Full=Homeobox protein knotted-1-like 1;
DE   AltName: Full=Homeobox protein HOS16;
DE   AltName: Full=Homeobox protein OSH6;
GN   Name=OSH6; Synonyms=HOS16; OrderedLocusNames=Os01g0302500, LOC_Os01g19694;
GN   ORFNames=B1146F03.18, P0035H10.13;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND DEVELOPMENTAL STAGE.
RC   STRAIN=cv. Nipponbare; TISSUE=Embryo;
RX   PubMed=10488233; DOI=10.2307/3871044;
RA   Sentoku N., Sato Y., Kurata N., Ito Y., Kitano H., Matsuoka M.;
RT   "Regional expression of the rice KN1-type homeobox gene family during
RT   embryo, shoot, and flower development.";
RL   Plant Cell 11:1651-1664(1999).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12447438; DOI=10.1038/nature01184;
RA   Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA   Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA   Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA   Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA   Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA   Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA   Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA   Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA   Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA   Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA   Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA   Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA   Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT   "The genome sequence and structure of rice chromosome 1.";
RL   Nature 420:312-316(2002).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 164-301.
RC   STRAIN=cv. Nipponbare; TISSUE=Embryo;
RA   Ito Y., Kurata N.;
RT   "cDNA for rice homeobox gene HOS16.";
RL   Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases.
RN   [7]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=18430022; DOI=10.1111/j.1742-4658.2008.06424.x;
RA   Jain M., Tyagi A.K., Khurana J.P.;
RT   "Genome-wide identification, classification, evolutionary expansion and
RT   expression analyses of homeobox genes in rice.";
RL   FEBS J. 275:2845-2861(2008).
CC   -!- FUNCTION: Probable transcription factor that may be involved in shoot
CC       formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108,
CC       ECO:0000255|PROSITE-ProRule:PRU00559}.
CC   -!- DEVELOPMENTAL STAGE: Highly expressed in the early globular stage
CC       embryo before 2 days after pollination (DAP), but not in the endosperm.
CC       At 3 and 4 DAP, expression is restricted to the region around or just
CC       below the center of the ventral side of the embryo, where the shoot
CC       apex subsequently arises. During the transition to the shoot apex
CC       differentiation stage, expression is divided between the upper and
CC       basal regions of the shoot area, and the notch between the first leaf
CC       primordium and epiblast, respectively. When the first leaf primordia is
CC       evident, expression is localized to the notches between the shoot
CC       apical meristem (SAM) and the first leaf primordium and the putative
CC       second leaf primordium. Expressed uniformly in the inflorescence
CC       meristem, but after the transition from inflorescence to the floral
CC       phase, located specifically in the notches between the floral meristem
CC       and glume primordia. At later stages of flower development, uniformly
CC       expressed throughout the corpus of the meristem, and in the notches
CC       between glume primordia, but less well defined than in the previous
CC       stage. {ECO:0000269|PubMed:10488233}.
CC   -!- SIMILARITY: Belongs to the TALE/KNOX homeobox family.
CC       {ECO:0000255|PROSITE-ProRule:PRU00559}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AB028883; BAA79224.1; -; mRNA.
DR   EMBL; AP002881; BAB19772.1; -; Genomic_DNA.
DR   EMBL; AP003206; BAB93157.1; -; Genomic_DNA.
DR   EMBL; AP008207; BAF04741.1; -; Genomic_DNA.
DR   EMBL; AP014957; BAS71730.1; -; Genomic_DNA.
DR   EMBL; AB007626; BAA77820.1; -; mRNA.
DR   RefSeq; XP_015634297.1; XM_015778811.1.
DR   AlphaFoldDB; Q9FP29; -.
DR   SMR; Q9FP29; -.
DR   STRING; 4530.OS01T0302500-01; -.
DR   PaxDb; Q9FP29; -.
DR   PRIDE; Q9FP29; -.
DR   EnsemblPlants; Os01t0302500-01; Os01t0302500-01; Os01g0302500.
DR   GeneID; 4325788; -.
DR   Gramene; Os01t0302500-01; Os01t0302500-01; Os01g0302500.
DR   KEGG; osa:4325788; -.
DR   eggNOG; KOG0773; Eukaryota.
DR   HOGENOM; CLU_040111_0_2_1; -.
DR   InParanoid; Q9FP29; -.
DR   OMA; ATHSDDM; -.
DR   OrthoDB; 961241at2759; -.
DR   Proteomes; UP000000763; Chromosome 1.
DR   Proteomes; UP000059680; Chromosome 1.
DR   Genevisible; Q9FP29; OS.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   CDD; cd00086; homeodomain; 1.
DR   InterPro; IPR005539; ELK_dom.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017970; Homeobox_CS.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR008422; Homeobox_KN_domain.
DR   InterPro; IPR005540; KNOX1.
DR   InterPro; IPR005541; KNOX2.
DR   Pfam; PF03789; ELK; 1.
DR   Pfam; PF05920; Homeobox_KN; 1.
DR   Pfam; PF03790; KNOX1; 1.
DR   Pfam; PF03791; KNOX2; 1.
DR   SMART; SM01188; ELK; 1.
DR   SMART; SM00389; HOX; 1.
DR   SMART; SM01255; KNOX1; 1.
DR   SMART; SM01256; KNOX2; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS51213; ELK; 1.
DR   PROSITE; PS00027; HOMEOBOX_1; 1.
DR   PROSITE; PS50071; HOMEOBOX_2; 1.
PE   2: Evidence at transcript level;
KW   DNA-binding; Homeobox; Nucleus; Reference proteome.
FT   CHAIN           1..301
FT                   /note="Homeobox protein knotted-1-like 1"
FT                   /id="PRO_0000360004"
FT   DOMAIN          188..208
FT                   /note="ELK"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00559"
FT   DNA_BIND        209..272
FT                   /note="Homeobox; TALE-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT   REGION          141..170
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        279
FT                   /note="L -> F (in Ref. 1; BAA79224)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   301 AA;  32736 MW;  C61314553CAA7539 CRC64;
     MEDLYSIHPG ISRVGGAASE ASGVGVVVGG GGGSSSSDLT ELMKAQIAGH PRYPTLLSAY
     IECRKVGAPP EVASLLKEIG RERRAGGGGG GAGQIGVDPE LDEFMEAYCR VLVRYKEELS
     RPFDEAASFL SSIQTQLSNL CSGATSPPAT TATHSDEMVG SSDEDQCSGE TDMLDIGQEQ
     SSRLADHELK EMLLKKYSGC LSRLRSEFLK KRKKGKLPKD ARSALLEWWN THYRWPYPTE
     EDKLRLAART GLDPKQINNW FINQRKRHWK PSDGMRFALM EGVAGGSSGT TLYFDTGTIG
     P
 
 
维奥蛋白资源库 - 中文蛋白资源 CopyRight © 2010-2024