KNOSA_ORYSJ
ID KNOSA_ORYSJ Reviewed; 311 AA.
AC Q7GDL5; B7F4B0; O65033;
DT 20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Homeobox protein knotted-1-like 10;
DE AltName: Full=Homeobox protein HOS9;
DE AltName: Full=Homeobox protein OSH71;
DE AltName: Full=Homeobox protein knotted-1-like 2;
DE Short=Oskn2;
GN Name=OSH71; Synonyms=HOS9; OrderedLocusNames=Os05g0129700, LOC_Os05g03884;
GN ORFNames=OSJNBa0056I11.15;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Nipponbare; TISSUE=Embryo;
RX PubMed=10095070; DOI=10.1016/s0167-4781(99)00023-8;
RA Ito Y., Eiguchi M., Kurata N.;
RT "Expression of novel homeobox genes in early embryogenesis in rice.";
RL Biochim. Biophys. Acta 1444:445-450(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Nipponbare; TISSUE=Embryo;
RX PubMed=10488233; DOI=10.2307/3871044;
RA Sentoku N., Sato Y., Kurata N., Ito Y., Kitano H., Matsuoka M.;
RT "Regional expression of the rice KN1-type homeobox gene family during
RT embryo, shoot, and flower development.";
RL Plant Cell 11:1651-1664(1999).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP FUNCTION, AND DEVELOPMENTAL STAGE.
RX PubMed=10080693; DOI=10.1023/a:1006153506868;
RA Postma-Haarsma A.D., Verwoert I.I.G., Stronk O.P., Koster J.,
RA Lamers G.E.M., Hoge J.H., Meijer A.H.;
RT "Characterization of the KNOX class homeobox genes Oskn2 and Oskn3
RT identified in a collection of cDNA libraries covering the early stages of
RT rice embryogenesis.";
RL Plant Mol. Biol. 39:257-271(1999).
RN [9]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18430022; DOI=10.1111/j.1742-4658.2008.06424.x;
RA Jain M., Tyagi A.K., Khurana J.P.;
RT "Genome-wide identification, classification, evolutionary expansion and
RT expression analyses of homeobox genes in rice.";
RL FEBS J. 275:2845-2861(2008).
CC -!- FUNCTION: Probable transcription factor that may be involved in shoot
CC formation during embryogenesis. {ECO:0000269|PubMed:10080693,
CC ECO:0000269|PubMed:10488233}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108,
CC ECO:0000255|PROSITE-ProRule:PRU00559}.
CC -!- DEVELOPMENTAL STAGE: Expressed in globular stage embryo 3 days after
CC pollination (DAP) in a small region just below the center of the
CC ventral portion of the embryo. At coleoptile stages, expressed in the
CC corresponding region of the epiblast and the central part of the
CC embryo, but weakly in the shoot apical meristem (SAM). At the shoot
CC apex differentiation stage, expressed in the cells surrounding the
CC provascular tissue and radicle primordia. In nearly mature embryos (6
CC DAP), expressed around the basal part of the provascular tissue and
CC radicle, and around the shoot region at the base of the first leaf
CC primordium, and the notch between the SAM and the second leaf
CC primordium. Expressed uniformly in the inflorescence meristem, but
CC after the transition from inflorescence to the floral phase, located
CC specifically in the notches between the floral meristem and glume
CC primordia. At later stages of flower development, uniformly expressed
CC throughout the corpus of the meristem, and in the notches between glume
CC primordia, but less well defined than in the previous stage.
CC {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10095070,
CC ECO:0000269|PubMed:10488233}.
CC -!- SIMILARITY: Belongs to the TALE/KNOX homeobox family.
CC {ECO:0000255|PROSITE-ProRule:PRU00559}.
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DR EMBL; AB007624; BAA77818.1; -; mRNA.
DR EMBL; AB028885; BAA79226.1; -; mRNA.
DR EMBL; AC130598; AAU10751.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF16460.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS92104.1; -; Genomic_DNA.
DR EMBL; AK111878; BAG99457.1; -; mRNA.
DR RefSeq; XP_015637898.1; XM_015782412.1.
DR AlphaFoldDB; Q7GDL5; -.
DR SMR; Q7GDL5; -.
DR STRING; 4530.OS05T0129700-01; -.
DR PaxDb; Q7GDL5; -.
DR PRIDE; Q7GDL5; -.
DR EnsemblPlants; Os05t0129700-01; Os05t0129700-01; Os05g0129700.
DR GeneID; 4337701; -.
DR Gramene; Os05t0129700-01; Os05t0129700-01; Os05g0129700.
DR KEGG; osa:4337701; -.
DR eggNOG; KOG0773; Eukaryota.
DR HOGENOM; CLU_040111_0_2_1; -.
DR InParanoid; Q7GDL5; -.
DR OMA; STHYRWP; -.
DR OrthoDB; 961241at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q7GDL5; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR005539; ELK_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR008422; Homeobox_KN_domain.
DR InterPro; IPR005540; KNOX1.
DR InterPro; IPR005541; KNOX2.
DR Pfam; PF03789; ELK; 1.
DR Pfam; PF05920; Homeobox_KN; 1.
DR Pfam; PF03790; KNOX1; 1.
DR Pfam; PF03791; KNOX2; 1.
DR SMART; SM01188; ELK; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM01255; KNOX1; 1.
DR SMART; SM01256; KNOX2; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51213; ELK; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Homeobox; Nucleus; Reference proteome.
FT CHAIN 1..311
FT /note="Homeobox protein knotted-1-like 10"
FT /id="PRO_0000360012"
FT DOMAIN 197..217
FT /note="ELK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00559"
FT DNA_BIND 218..281
FT /note="Homeobox; TALE-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 1..45
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 153..184
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 311 AA; 33348 MW; 1D837EC32D83F9E9 CRC64;
MEDLYSIHPG ISRGGGGGGG GAASEASGVA GGGSSPPHPP PPATTAAAAD LTELMKAQIA
GHPSYPSLLS AYIECRKVGA PPEVTTLLEE IGREGRGGGG GATAGGEIGL DPELDEFMET
YCRVLERYKE ELTRPFDEAA SFLTGIHTQL ASLCGGAPPP TDNSDEMVGS SEDEPCSGDA
DAADFGQEHS SRLADHELKE MLLKKYSGCL SRLRSEFLKK RKKGKLPKDA RSALMDWWNT
HYRWPYPTEE DKVRLAAMTG LDPKQINNWF INQRKRHWKP SEDMRFALME GVTGGSSSGT
TLYFDTGTIG P
