KNOSB_ORYSJ
ID KNOSB_ORYSJ Reviewed; 323 AA.
AC Q94LW4; B7F8T4; Q9SXN0;
DT 20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT 20-JAN-2009, sequence version 2.
DT 03-AUG-2022, entry version 130.
DE RecName: Full=Homeobox protein knotted-1-like 11;
DE AltName: Full=Homeobox protein HOS59;
GN Name=HOS59; OrderedLocusNames=Os06g0646600, LOC_Os06g43860;
GN ORFNames=OJ1226_A12.18, OSJNBa0062J02.2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2 AND 4), AND TISSUE SPECIFICITY.
RC STRAIN=cv. Nipponbare;
RX PubMed=12034492; DOI=10.1016/s0378-1119(02)00460-2;
RA Ito Y., Hirochika H., Kurata N.;
RT "Organ-specific alternative transcripts of KNOX family class 2 homeobox
RT genes of rice.";
RL Gene 288:41-47(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3).
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18430022; DOI=10.1111/j.1742-4658.2008.06424.x;
RA Jain M., Tyagi A.K., Khurana J.P.;
RT "Genome-wide identification, classification, evolutionary expansion and
RT expression analyses of homeobox genes in rice.";
RL FEBS J. 275:2845-2861(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108,
CC ECO:0000255|PROSITE-ProRule:PRU00559}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=4;
CC Name=1;
CC IsoId=Q94LW4-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q94LW4-2; Sequence=VSP_036187, VSP_036188;
CC Name=3;
CC IsoId=Q94LW4-3; Sequence=VSP_036186;
CC Name=4;
CC IsoId=Q94LW4-4; Sequence=VSP_036185, VSP_036187, VSP_036188;
CC -!- TISSUE SPECIFICITY: Isoform 2 is expressed in roots, leaf blades, leaf
CC sheaths and flowers. Isoform 4 is expressed in leaf blades and at lower
CC levels in flowers. {ECO:0000269|PubMed:12034492}.
CC -!- SIMILARITY: Belongs to the TALE/KNOX homeobox family.
CC {ECO:0000255|PROSITE-ProRule:PRU00559}.
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DR EMBL; AB061818; BAB55659.1; -; mRNA.
DR EMBL; AB007628; BAA77822.2; -; mRNA.
DR EMBL; AP003517; BAD37316.1; -; Genomic_DNA.
DR EMBL; AP004008; BAD37613.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20114.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS98866.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS98867.1; -; Genomic_DNA.
DR EMBL; AK241438; BAH01032.1; -; mRNA.
DR EMBL; AK289177; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015644389.1; XM_015788903.1. [Q94LW4-1]
DR RefSeq; XP_015644390.1; XM_015788904.1. [Q94LW4-3]
DR AlphaFoldDB; Q94LW4; -.
DR SMR; Q94LW4; -.
DR STRING; 4530.OS06T0646600-01; -.
DR PaxDb; Q94LW4; -.
DR PRIDE; Q94LW4; -.
DR EnsemblPlants; Os06t0646600-01; Os06t0646600-01; Os06g0646600. [Q94LW4-1]
DR EnsemblPlants; Os06t0646600-02; Os06t0646600-02; Os06g0646600. [Q94LW4-3]
DR GeneID; 4341661; -.
DR Gramene; Os06t0646600-01; Os06t0646600-01; Os06g0646600. [Q94LW4-1]
DR Gramene; Os06t0646600-02; Os06t0646600-02; Os06g0646600. [Q94LW4-3]
DR KEGG; osa:4341661; -.
DR eggNOG; KOG0773; Eukaryota.
DR InParanoid; Q94LW4; -.
DR OMA; HAQLANX; -.
DR OrthoDB; 1070344at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q94LW4; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR005539; ELK_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR008422; Homeobox_KN_domain.
DR InterPro; IPR005540; KNOX1.
DR InterPro; IPR005541; KNOX2.
DR Pfam; PF03789; ELK; 1.
DR Pfam; PF05920; Homeobox_KN; 1.
DR Pfam; PF03790; KNOX1; 1.
DR Pfam; PF03791; KNOX2; 1.
DR SMART; SM01188; ELK; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM01255; KNOX1; 1.
DR SMART; SM01256; KNOX2; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51213; ELK; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Homeobox; Nucleus; Reference proteome.
FT CHAIN 1..323
FT /note="Homeobox protein knotted-1-like 11"
FT /id="PRO_0000360014"
FT DOMAIN 214..234
FT /note="ELK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00559"
FT DNA_BIND 235..298
FT /note="Homeobox; TALE-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 158..180
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 291..323
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..139
FT /note="Missing (in isoform 4)"
FT /evidence="ECO:0000303|PubMed:12034492"
FT /id="VSP_036185"
FT VAR_SEQ 312..323
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000303|Ref.5"
FT /id="VSP_036186"
FT VAR_SEQ 312..317
FT /note="SNAGDG -> YRVVDF (in isoform 2 and isoform 4)"
FT /evidence="ECO:0000303|PubMed:12034492"
FT /id="VSP_036187"
FT VAR_SEQ 318..323
FT /note="Missing (in isoform 2 and isoform 4)"
FT /evidence="ECO:0000303|PubMed:12034492"
FT /id="VSP_036188"
SQ SEQUENCE 323 AA; 35106 MW; 93FE9145A4AFE21A CRC64;
MAFHYQDHAL AMDAAAAAAE TGGHHHPGFV GAGGVVGGGG GGGWEREKAA IAAHPLYERL
LEAHVACLRV ATPVDQLPRI DAQIAARPPP LAAATAAAAA AAAGGAPSGG EELDLFMTHY
VLLLCSFKEQ LQQHVRVHAM EAVMACWELE QTLQSLTGAS PREGSGATMS DDEDNQVDSE
SNMFDGNDGS DGMGFGPLML TEGERSLVER VRQELKHELK QGYREKLVDI REEILRKRRA
GKLPGDTAST LKAWWQAHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPA
SSSSDKSKRK RSNAGDGKAE QSW
