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KNOSC_ORYSI
ID   KNOSC_ORYSI             Reviewed;         355 AA.
AC   O65034; A2YHU1;
DT   20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT   20-JAN-2009, sequence version 2.
DT   25-MAY-2022, entry version 123.
DE   RecName: Full=Homeobox protein knotted-1-like 12;
DE   AltName: Full=Homeobox protein HOS3;
DE   AltName: Full=Homeobox protein OSH15;
DE   AltName: Full=Homeobox protein knotted-1-like 3;
DE            Short=Oskn3;
GN   Name=OSH15; Synonyms=HOS3; ORFNames=OsI_023884;
OS   Oryza sativa subsp. indica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39946;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND DEVELOPMENTAL STAGE.
RC   STRAIN=cv. IR58;
RX   PubMed=10080693; DOI=10.1023/a:1006153506868;
RA   Postma-Haarsma A.D., Verwoert I.I.G., Stronk O.P., Koster J.,
RA   Lamers G.E.M., Hoge J.H., Meijer A.H.;
RT   "Characterization of the KNOX class homeobox genes Oskn2 and Oskn3
RT   identified in a collection of cDNA libraries covering the early stages of
RT   rice embryogenesis.";
RL   Plant Mol. Biol. 39:257-271(1999).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. 93-11;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [3]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=18430022; DOI=10.1111/j.1742-4658.2008.06424.x;
RA   Jain M., Tyagi A.K., Khurana J.P.;
RT   "Genome-wide identification, classification, evolutionary expansion and
RT   expression analyses of homeobox genes in rice.";
RL   FEBS J. 275:2845-2861(2008).
CC   -!- FUNCTION: Probable transcription factor that may be involved in shoot
CC       formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108,
CC       ECO:0000255|PROSITE-ProRule:PRU00559}.
CC   -!- DEVELOPMENTAL STAGE: Expressed in the embryo at 4 days after
CC       pollination (DAP) in the ventral and basal part of the embryo including
CC       the initial of the shoot apical meristem (SAM). At 5 DAP, expressed at
CC       the ventral side of the embryo, but the expression within SAM is down-
CC       regulated. At 7 DAP, expression is restricted to the boundaries between
CC       the embryonic organs, between the scutellum and the coleoptile, the
CC       coleoptile and the second leaf primordium, the shoot apical meristem
CC       and the first leaf primordium, the first leaf primordium and the
CC       coleoptile, the coleoptile and the epiblast and at the tip of the
CC       epiblast, but not in the leaf primordia. {ECO:0000269|PubMed:10080693}.
CC   -!- SIMILARITY: Belongs to the TALE/KNOX homeobox family.
CC       {ECO:0000255|PROSITE-ProRule:PRU00559}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAC32818.1; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
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DR   EMBL; AF050181; AAC32818.1; ALT_SEQ; mRNA.
DR   EMBL; CM000132; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   PIR; T02785; T02785.
DR   AlphaFoldDB; O65034; -.
DR   SMR; O65034; -.
DR   STRING; 39946.O65034; -.
DR   EnsemblPlants; BGIOSGA025091-TA; BGIOSGA025091-PA; BGIOSGA025091.
DR   Gramene; BGIOSGA025091-TA; BGIOSGA025091-PA; BGIOSGA025091.
DR   HOGENOM; CLU_040111_0_0_1; -.
DR   OMA; TQEANNN; -.
DR   Proteomes; UP000007015; Chromosome 7.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR   CDD; cd00086; homeodomain; 1.
DR   InterPro; IPR005539; ELK_dom.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017970; Homeobox_CS.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR008422; Homeobox_KN_domain.
DR   InterPro; IPR005540; KNOX1.
DR   InterPro; IPR005541; KNOX2.
DR   Pfam; PF03789; ELK; 1.
DR   Pfam; PF05920; Homeobox_KN; 1.
DR   Pfam; PF03790; KNOX1; 1.
DR   Pfam; PF03791; KNOX2; 1.
DR   SMART; SM01188; ELK; 1.
DR   SMART; SM00389; HOX; 1.
DR   SMART; SM01255; KNOX1; 1.
DR   SMART; SM01256; KNOX2; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS51213; ELK; 1.
DR   PROSITE; PS00027; HOMEOBOX_1; 1.
DR   PROSITE; PS50071; HOMEOBOX_2; 1.
PE   2: Evidence at transcript level;
KW   DNA-binding; Homeobox; Nucleus; Reference proteome.
FT   CHAIN           1..355
FT                   /note="Homeobox protein knotted-1-like 12"
FT                   /id="PRO_0000360016"
FT   DOMAIN          236..256
FT                   /note="ELK"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00559"
FT   DNA_BIND        257..320
FT                   /note="Homeobox; TALE-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT   REGION          52..82
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          207..233
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        208..233
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   355 AA;  38590 MW;  9BE7C380611865E2 CRC64;
     MDQSFGNLGG GGGAGGSGKA AASSFLQLPL STAAAATAYY GTPLALHQAA AAAGPSQYHG
     HGHPHHGGGH HHSKHGGAGG GEISAAEAES IKAKIMAHPQ YSALLAAYLD CQKVGAPPEV
     LERLTATAAK LDARPPGRHD ARDPELDQFM EAYCNMLAKY REELTRPIDE AMEFLKRVES
     QLDTIAGGAH GGGAGSARLL LADGKSECVG SSEDDMDPSG RENEPPEIDP RAEDKELKFQ
     LLKKYSGYLS SLRQEFSKKK KKGKLPKEAR QKLLHWWELH YKWPYPSETE KIALAESTGL
     DQKQINNWFI NQRKRHWKPS EDMPFVMMEG FHPQNAAALY MDGPFMADGM YRLGS
 
 
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