KNOSC_ORYSJ
ID KNOSC_ORYSJ Reviewed; 355 AA.
AC O80416; Q84ZI8; Q9SXM6;
DT 20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 03-AUG-2022, entry version 135.
DE RecName: Full=Homeobox protein knotted-1-like 12;
DE AltName: Full=Homeobox protein HOS3;
DE AltName: Full=Homeobox protein OSH15;
DE AltName: Full=Homeobox protein knotted-1-like 3;
DE Short=Oskn3;
GN Name=OSH15; Synonyms=HOS3; OrderedLocusNames=Os07g0129700, LOC_Os07g03770;
GN ORFNames=OSJNBa0088O14.22, P0483E09.2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, AND DEVELOPMENTAL
RP STAGE.
RC STRAIN=cv. Nipponbare; TISSUE=Shoot;
RX PubMed=9869405; DOI=10.1023/a:1006065622251;
RA Sato Y., Sentoku N., Nagato Y., Matsuoka M.;
RT "Isolation and characterization of a rice homeobox gene, OSH15.";
RL Plant Mol. Biol. 38:983-998(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Nipponbare; TISSUE=Embryo;
RX PubMed=10095070; DOI=10.1016/s0167-4781(99)00023-8;
RA Ito Y., Eiguchi M., Kurata N.;
RT "Expression of novel homeobox genes in early embryogenesis in rice.";
RL Biochim. Biophys. Acta 1444:445-450(1999).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP FUNCTION, AND DEVELOPMENTAL STAGE.
RX PubMed=10080693; DOI=10.1023/a:1006153506868;
RA Postma-Haarsma A.D., Verwoert I.I.G., Stronk O.P., Koster J.,
RA Lamers G.E.M., Hoge J.H., Meijer A.H.;
RT "Characterization of the KNOX class homeobox genes Oskn2 and Oskn3
RT identified in a collection of cDNA libraries covering the early stages of
RT rice embryogenesis.";
RL Plant Mol. Biol. 39:257-271(1999).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18430022; DOI=10.1111/j.1742-4658.2008.06424.x;
RA Jain M., Tyagi A.K., Khurana J.P.;
RT "Genome-wide identification, classification, evolutionary expansion and
RT expression analyses of homeobox genes in rice.";
RL FEBS J. 275:2845-2861(2008).
CC -!- FUNCTION: Probable transcription factor that may be involved in shoot
CC formation during embryogenesis. {ECO:0000269|PubMed:10080693,
CC ECO:0000269|PubMed:9869405}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00108,
CC ECO:0000255|PROSITE-ProRule:PRU00559}.
CC -!- TISSUE SPECIFICITY: Expressed in stems, rachis and inflorescence.
CC {ECO:0000269|PubMed:9869405}.
CC -!- DEVELOPMENTAL STAGE: Expressed in the embryo at 4 days after
CC pollination (DAP) in the ventral and basal part of the embryo,
CC including the initial of the shoot apical meristem (SAM). At 5 DAP,
CC expressed at the ventral side of the embryo, but the expression within
CC SAM is down-regulated. At 7 DAP, expression is restricted to the
CC boundaries between the embryonic organs, between the scutellum and the
CC coleoptile, the coleoptile and the second leaf primordium, the shoot
CC apical meristem and the first leaf primordium, the first leaf
CC primordium and the coleoptile, the coleoptile and the epiblast and at
CC the tip of the epiblast, but not in the leaf primordia.
CC {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10095070,
CC ECO:0000269|PubMed:9869405}.
CC -!- SIMILARITY: Belongs to the TALE/KNOX homeobox family.
CC {ECO:0000255|PROSITE-ProRule:PRU00559}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC57683.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB016071; BAA31688.1; -; mRNA.
DR EMBL; AB007623; BAA77817.1; -; mRNA.
DR EMBL; AP006172; BAC84729.1; -; Genomic_DNA.
DR EMBL; AP004301; BAC57683.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014963; BAS99916.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF20732.1; -; Genomic_DNA.
DR PIR; T02785; T02785.
DR RefSeq; XP_015646117.1; XM_015790631.1.
DR AlphaFoldDB; O80416; -.
DR SMR; O80416; -.
DR IntAct; O80416; 1.
DR STRING; 4530.OS07T0129700-01; -.
DR PaxDb; O80416; -.
DR PRIDE; O80416; -.
DR EnsemblPlants; Os07t0129700-01; Os07t0129700-01; Os07g0129700.
DR GeneID; 4342320; -.
DR Gramene; Os07t0129700-01; Os07t0129700-01; Os07g0129700.
DR KEGG; osa:4342320; -.
DR eggNOG; KOG0773; Eukaryota.
DR HOGENOM; CLU_040111_0_0_1; -.
DR InParanoid; O80416; -.
DR OMA; TQEANNN; -.
DR OrthoDB; 1171537at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; O80416; baseline and differential.
DR Genevisible; O80416; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR005539; ELK_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR008422; Homeobox_KN_domain.
DR InterPro; IPR005540; KNOX1.
DR InterPro; IPR005541; KNOX2.
DR Pfam; PF03789; ELK; 1.
DR Pfam; PF05920; Homeobox_KN; 1.
DR Pfam; PF03790; KNOX1; 1.
DR Pfam; PF03791; KNOX2; 1.
DR SMART; SM01188; ELK; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM01255; KNOX1; 1.
DR SMART; SM01256; KNOX2; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS51213; ELK; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Homeobox; Nucleus; Reference proteome.
FT CHAIN 1..355
FT /note="Homeobox protein knotted-1-like 12"
FT /id="PRO_0000360015"
FT DOMAIN 236..256
FT /note="ELK"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00559"
FT DNA_BIND 257..320
FT /note="Homeobox; TALE-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 52..82
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 207..233
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 208..233
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 332
FT /note="H -> P (in Ref. 2; BAA77817)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 355 AA; 38590 MW; 9BE7C380611865E2 CRC64;
MDQSFGNLGG GGGAGGSGKA AASSFLQLPL STAAAATAYY GTPLALHQAA AAAGPSQYHG
HGHPHHGGGH HHSKHGGAGG GEISAAEAES IKAKIMAHPQ YSALLAAYLD CQKVGAPPEV
LERLTATAAK LDARPPGRHD ARDPELDQFM EAYCNMLAKY REELTRPIDE AMEFLKRVES
QLDTIAGGAH GGGAGSARLL LADGKSECVG SSEDDMDPSG RENEPPEIDP RAEDKELKFQ
LLKKYSGYLS SLRQEFSKKK KKGKLPKEAR QKLLHWWELH YKWPYPSETE KIALAESTGL
DQKQINNWFI NQRKRHWKPS EDMPFVMMEG FHPQNAAALY MDGPFMADGM YRLGS
