KRP5_ORYSJ
ID KRP5_ORYSJ Reviewed; 221 AA.
AC Q283L0; A3ADW9; B7E9X8;
DT 24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 04-APR-2006, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=Cyclin-dependent kinase inhibitor 5;
DE AltName: Full=KIP-related protein 5;
GN Name=KRP5; OrderedLocusNames=Os03g0137800, LOC_Os03g04490;
GN ORFNames=OsJ_008991;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND DEVELOPMENTAL STAGE.
RX PubMed=17012406; DOI=10.1104/pp.106.087056;
RA Barroco R.M., Peres A., Droual A.-M., de Veylder L., Nguyen L.S.L.,
RA de Wolf J., Mironov V., Peerbolte R., Beemster G.T.S., Inze D.,
RA Broekaert W.F., Frankard V.;
RT "The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role
RT in seed development of rice.";
RL Plant Physiol. 142:1053-1064(2006).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP INDUCTION, AND GENE FAMILY.
RX PubMed=17443292; DOI=10.1007/s11103-007-9154-y;
RA Guo J., Song J., Wang F., Zhang X.S.;
RT "Genome-wide identification and expression analysis of rice cell cycle
RT genes.";
RL Plant Mol. Biol. 64:349-360(2007).
CC -!- DEVELOPMENTAL STAGE: Highly expressed 2 days after pollination and then
CC rapidly decreases to basal level. {ECO:0000269|PubMed:17012406}.
CC -!- INDUCTION: By auxin. Down-regulated by cytokinin.
CC {ECO:0000269|PubMed:17443292}.
CC -!- SIMILARITY: Belongs to the CDI family. ICK/KRP subfamily.
CC {ECO:0000305}.
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DR EMBL; DQ229366; ABB70062.1; -; mRNA.
DR EMBL; DP000009; ABF93871.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10819.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82200.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ25508.1; -; Genomic_DNA.
DR EMBL; AK064723; BAG89175.1; -; mRNA.
DR RefSeq; XP_015629111.1; XM_015773625.1.
DR AlphaFoldDB; Q283L0; -.
DR STRING; 4530.OS03T0137800-01; -.
DR PaxDb; Q283L0; -.
DR PRIDE; Q283L0; -.
DR EnsemblPlants; Os03t0137800-01; Os03t0137800-01; Os03g0137800.
DR GeneID; 4331554; -.
DR Gramene; Os03t0137800-01; Os03t0137800-01; Os03g0137800.
DR KEGG; osa:4331554; -.
DR eggNOG; ENOG502QXA1; Eukaryota.
DR HOGENOM; CLU_083146_0_1_1; -.
DR InParanoid; Q283L0; -.
DR OMA; QKMFMEK; -.
DR OrthoDB; 1397852at2759; -.
DR PlantReactome; R-OSA-9640760; G1 phase.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q283L0; OS.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:0004861; F:cyclin-dependent protein serine/threonine kinase inhibitor activity; IEA:InterPro.
DR Gene3D; 4.10.365.10; -; 1.
DR InterPro; IPR003175; CDI_dom.
DR InterPro; IPR044898; CDI_dom_sf.
DR InterPro; IPR044275; KRP.
DR PANTHER; PTHR46776; PTHR46776; 1.
DR Pfam; PF02234; CDI; 1.
DR PIRSF; PIRSF017811; CDK_inhib_pln; 1.
PE 2: Evidence at transcript level;
KW Protein kinase inhibitor; Reference proteome.
FT CHAIN 1..221
FT /note="Cyclin-dependent kinase inhibitor 5"
FT /id="PRO_0000295668"
FT REGION 27..92
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 31..45
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 64..88
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 99
FT /note="M -> I (in Ref. 6; EAZ25508)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 221 AA; 24177 MW; 50AE0C54088F0DA9 CRC64;
MGKYMRKGKV SGEVAVMEVG GALLGVRTRS RTLALQRTTS SQKPPEKGEG DPGAGAGAGA
EYLELRSRRL EKPPPHTPPA KEKETARRAS AAAAAAVRMP AAPQAAEEFE AEVEVSFGDN
VLDLDGDAME RSTRETTPCS LIRSSEMIST PGSTTKTNTS ISSRRRMETS VCRYVPSSLE
MEEFFAAAEQ QQHQAFRERY NFCPVNDCPL PGRYEWTRLD C
