LBD13_ARATH
ID LBD13_ARATH Reviewed; 268 AA.
AC Q9AT61; B7XG64; O22930; Q147P1; Q8W1D8;
DT 28-MAR-2003, integrated into UniProtKB/Swiss-Prot.
DT 28-MAR-2003, sequence version 2.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=LOB domain-containing protein 13;
DE AltName: Full=ASYMMETRIC LEAVES 2-like protein 10;
DE Short=AS2-like protein 10;
GN Name=LBD13; Synonyms=ASL10; OrderedLocusNames=At2g30340; ORFNames=T9D9.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=12068116; DOI=10.1104/pp.010926;
RA Shuai B., Reynaga-Pena C.G., Springer P.S.;
RT "The LATERAL ORGAN BOUNDARIES gene defines a novel, plant-specific gene
RT family.";
RL Plant Physiol. 129:747-761(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=19154202; DOI=10.1111/j.1365-313x.2009.03797.x;
RA Matsumura Y., Iwakawa H., Machida Y., Machida C.;
RT "Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN
RT BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and
RT molecular comparisons between AS2 and other family members.";
RL Plant J. 58:525-537(2009).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 44-268.
RC STRAIN=cv. Columbia; TISSUE=Root;
RX PubMed=12481096; DOI=10.1104/pp.010207;
RA Xiao Y.-L., Malik M., Whitelaw C.A., Town C.D.;
RT "Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2
RT of Arabidopsis.";
RL Plant Physiol. 130:2118-2128(2002).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12040093; DOI=10.1093/pcp/pcf077;
RA Iwakawa H., Ueno Y., Semiarti E., Onouchi H., Kojima S., Tsukaya H.,
RA Hasebe M., Soma T., Ikezaki M., Machida C., Machida Y.;
RT "The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for
RT formation of a symmetric flat leaf lamina, encodes a member of a novel
RT family of proteins characterized by cysteine repeats and a leucine
RT zipper.";
RL Plant Cell Physiol. 43:467-478(2002).
CC -!- INTERACTION:
CC Q9AT61; Q39011: ASK7; NbExp=3; IntAct=EBI-4432427, EBI-1798250;
CC Q9AT61; Q94ID6: ERF12; NbExp=5; IntAct=EBI-4432427, EBI-4446727;
CC Q9AT61; Q8LBW3: LBD12; NbExp=3; IntAct=EBI-4432427, EBI-15198991;
CC Q9AT61; Q9SHE9: LBD4; NbExp=4; IntAct=EBI-4432427, EBI-4445715;
CC Q9AT61; Q9FML4: LOB; NbExp=3; IntAct=EBI-4432427, EBI-15194891;
CC -!- TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in
CC flowers, but not in leaves or inflorescence stems.
CC {ECO:0000269|PubMed:12068116}.
CC -!- SIMILARITY: Belongs to the LOB domain-containing protein family.
CC {ECO:0000305}.
CC -!- CAUTION: It is uncertain whether Met-1 or Met-33 is the initiator.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAK31142.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AF447888; AAL38033.1; -; mRNA.
DR EMBL; AB473843; BAH10554.1; -; mRNA.
DR EMBL; AC002338; AAC16936.2; -; Genomic_DNA.
DR EMBL; CP002685; AEC08372.1; -; Genomic_DNA.
DR EMBL; BT026052; ABG48408.1; -; mRNA.
DR EMBL; AF345338; AAK31142.1; ALT_INIT; mRNA.
DR PIR; C84707; C84707.
DR RefSeq; NP_850141.1; NM_179810.3.
DR AlphaFoldDB; Q9AT61; -.
DR SMR; Q9AT61; -.
DR BioGRID; 2933; 9.
DR IntAct; Q9AT61; 9.
DR STRING; 3702.AT2G30340.1; -.
DR PaxDb; Q9AT61; -.
DR PRIDE; Q9AT61; -.
DR ProteomicsDB; 250731; -.
DR EnsemblPlants; AT2G30340.1; AT2G30340.1; AT2G30340.
DR GeneID; 817584; -.
DR Gramene; AT2G30340.1; AT2G30340.1; AT2G30340.
DR KEGG; ath:AT2G30340; -.
DR Araport; AT2G30340; -.
DR TAIR; locus:2065769; AT2G30340.
DR eggNOG; ENOG502R7NZ; Eukaryota.
DR HOGENOM; CLU_058353_0_0_1; -.
DR InParanoid; Q9AT61; -.
DR OMA; STNIMHH; -.
DR PhylomeDB; Q9AT61; -.
DR PRO; PR:Q9AT61; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9AT61; baseline and differential.
DR Genevisible; Q9AT61; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0010311; P:lateral root formation; IMP:TAIR.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
DR InterPro; IPR004883; LOB.
DR Pfam; PF03195; LOB; 1.
DR PROSITE; PS50891; LOB; 1.
PE 1: Evidence at protein level;
KW Reference proteome.
FT CHAIN 1..268
FT /note="LOB domain-containing protein 13"
FT /id="PRO_0000132264"
FT DOMAIN 51..152
FT /note="LOB"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00291"
FT REGION 191..268
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 191..223
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 224..268
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 268 AA; 29091 MW; 77D8F3F72CF352F9 CRC64;
MSREREGFGE YYETVKKIKK DPAFETTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR
RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV GESQRGDAAN SLVYEANLRL
RDPIYGCMGA ISALQHHIQS LQSELTTVRT EILRHKYQEA TTITSLQNNF NSTTTTSSVS
CDQHALASAI LLPPPPPPPP TPRPPRLLSS QPAPPPTPPV SLPSPSMVVS SSSSSNSSAT
NSMYNPPPSS TAGYSNSLSS DNNVHYFD
