LBD1_ARATH
ID LBD1_ARATH Reviewed; 190 AA.
AC Q9LQR0; B7XG62;
DT 28-MAR-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=LOB domain-containing protein 1;
DE AltName: Full=ASYMMETRIC LEAVES 2-like protein 8;
DE Short=AS2-like protein 8;
GN Name=LBD1; Synonyms=ASL8; OrderedLocusNames=At1g07900; ORFNames=F24B9.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=19154202; DOI=10.1111/j.1365-313x.2009.03797.x;
RA Matsumura Y., Iwakawa H., Machida Y., Machida C.;
RT "Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN
RT BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and
RT molecular comparisons between AS2 and other family members.";
RL Plant J. 58:525-537(2009).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12068116; DOI=10.1104/pp.010926;
RA Shuai B., Reynaga-Pena C.G., Springer P.S.;
RT "The LATERAL ORGAN BOUNDARIES gene defines a novel, plant-specific gene
RT family.";
RL Plant Physiol. 129:747-761(2002).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12040093; DOI=10.1093/pcp/pcf077;
RA Iwakawa H., Ueno Y., Semiarti E., Onouchi H., Kojima S., Tsukaya H.,
RA Hasebe M., Soma T., Ikezaki M., Machida C., Machida Y.;
RT "The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for
RT formation of a symmetric flat leaf lamina, encodes a member of a novel
RT family of proteins characterized by cysteine repeats and a leucine
RT zipper.";
RL Plant Cell Physiol. 43:467-478(2002).
CC -!- TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and
CC flowers. {ECO:0000269|PubMed:12068116}.
CC -!- SIMILARITY: Belongs to the LOB domain-containing protein family.
CC {ECO:0000305}.
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DR EMBL; AB473841; BAH10552.1; -; mRNA.
DR EMBL; AC007583; AAF75065.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28208.1; -; Genomic_DNA.
DR PIR; E86214; E86214.
DR RefSeq; NP_172268.1; NM_100664.5.
DR AlphaFoldDB; Q9LQR0; -.
DR SMR; Q9LQR0; -.
DR BioGRID; 22546; 2.
DR STRING; 3702.AT1G07900.1; -.
DR PaxDb; Q9LQR0; -.
DR PRIDE; Q9LQR0; -.
DR ProteomicsDB; 237151; -.
DR EnsemblPlants; AT1G07900.1; AT1G07900.1; AT1G07900.
DR GeneID; 837305; -.
DR Gramene; AT1G07900.1; AT1G07900.1; AT1G07900.
DR KEGG; ath:AT1G07900; -.
DR Araport; AT1G07900; -.
DR TAIR; locus:2026611; AT1G07900.
DR eggNOG; ENOG502QV36; Eukaryota.
DR HOGENOM; CLU_058353_4_0_1; -.
DR InParanoid; Q9LQR0; -.
DR OMA; NSSMLWW; -.
DR OrthoDB; 1419561at2759; -.
DR PhylomeDB; Q9LQR0; -.
DR PRO; PR:Q9LQR0; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LQR0; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR InterPro; IPR004883; LOB.
DR Pfam; PF03195; LOB; 1.
DR PROSITE; PS50891; LOB; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..190
FT /note="LOB domain-containing protein 1"
FT /id="PRO_0000132252"
FT DOMAIN 32..133
FT /note="LOB"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00291"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..25
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 190 AA; 21410 MW; 91F1D38E48C724A6 CRC64;
MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA
KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR IRDPVYGCAG AIYHLQRQVS
ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS
MLWWDPLWTC