LBD25_ARATH
ID LBD25_ARATH Reviewed; 159 AA.
AC Q8L8Q3; B7XG57; Q75PS1; Q8W1D6; Q9LVX4;
DT 28-MAR-2003, integrated into UniProtKB/Swiss-Prot.
DT 22-SEP-2009, sequence version 3.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=LOB domain-containing protein 25;
DE AltName: Full=ASYMMETRIC LEAVES 2-like protein 3;
DE Short=AS2-like protein 3;
GN Name=LBD25; Synonyms=ASL3; OrderedLocusNames=At3g27650; ORFNames=MGF10.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=12068116; DOI=10.1104/pp.010926;
RA Shuai B., Reynaga-Pena C.G., Springer P.S.;
RT "The LATERAL ORGAN BOUNDARIES gene defines a novel, plant-specific gene
RT family.";
RL Plant Physiol. 129:747-761(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12040093; DOI=10.1093/pcp/pcf077;
RA Iwakawa H., Ueno Y., Semiarti E., Onouchi H., Kojima S., Tsukaya H.,
RA Hasebe M., Soma T., Ikezaki M., Machida C., Machida Y.;
RT "The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for
RT formation of a symmetric flat leaf lamina, encodes a member of a novel
RT family of proteins characterized by cysteine repeats and a leucine
RT zipper.";
RL Plant Cell Physiol. 43:467-478(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=19154202; DOI=10.1111/j.1365-313x.2009.03797.x;
RA Matsumura Y., Iwakawa H., Machida Y., Machida C.;
RT "Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN
RT BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and
RT molecular comparisons between AS2 and other family members.";
RL Plant J. 58:525-537(2009).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and
CC flowers. {ECO:0000269|PubMed:12068116}.
CC -!- SIMILARITY: Belongs to the LOB domain-containing protein family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB02689.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AF447892; AAL38037.1; -; mRNA.
DR EMBL; AB164304; BAD12423.1; -; mRNA.
DR EMBL; AB473836; BAH10547.1; -; mRNA.
DR EMBL; AB018114; BAB02689.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE77348.1; -; Genomic_DNA.
DR EMBL; AY088878; AAM67184.1; -; mRNA.
DR RefSeq; NP_566823.1; NM_113681.2.
DR AlphaFoldDB; Q8L8Q3; -.
DR SMR; Q8L8Q3; -.
DR BioGRID; 7717; 12.
DR IntAct; Q8L8Q3; 12.
DR STRING; 3702.AT3G27650.1; -.
DR PaxDb; Q8L8Q3; -.
DR PRIDE; Q8L8Q3; -.
DR ProteomicsDB; 250724; -.
DR DNASU; 822387; -.
DR EnsemblPlants; AT3G27650.1; AT3G27650.1; AT3G27650.
DR GeneID; 822387; -.
DR Gramene; AT3G27650.1; AT3G27650.1; AT3G27650.
DR KEGG; ath:AT3G27650; -.
DR Araport; AT3G27650; -.
DR TAIR; locus:2089184; AT3G27650.
DR eggNOG; ENOG502RY39; Eukaryota.
DR HOGENOM; CLU_058353_6_1_1; -.
DR InParanoid; Q8L8Q3; -.
DR OMA; YSACNEM; -.
DR OrthoDB; 1437497at2759; -.
DR PhylomeDB; Q8L8Q3; -.
DR PRO; PR:Q8L8Q3; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q8L8Q3; baseline and differential.
DR Genevisible; Q8L8Q3; AT.
DR InterPro; IPR004883; LOB.
DR Pfam; PF03195; LOB; 1.
DR PROSITE; PS50891; LOB; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..159
FT /note="LOB domain-containing protein 25"
FT /id="PRO_0000132276"
FT DOMAIN 38..139
FT /note="LOB"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00291"
FT CONFLICT 24
FT /note="A -> T (in Ref. 6; AAL38037)"
FT /evidence="ECO:0000305"
FT CONFLICT 88
FT /note="A -> P (in Ref. 6; AAM67184)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 159 AA; 17749 MW; 6B9F9D5FA7818BBE CRC64;
MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF
PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA YEAEARLKDP VYGCVGAISV
LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG
