ID   LBD29_ARATH             Reviewed;         218 AA.
AC   Q9M2J7; B7XG70; Q1LYU4;
DT   28-MAR-2003, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   25-MAY-2022, entry version 100.
DE   RecName: Full=LOB domain-containing protein 29;
DE   AltName: Full=ASYMMETRIC LEAVES 2-like protein 16;
DE            Short=AS2-like protein 16;
GN   Name=LBD29; Synonyms=ASL16; OrderedLocusNames=At3g58190;
GN   ORFNames=F9D24.100;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP   NOMENCLATURE.
RC   STRAIN=cv. Columbia;
RX   PubMed=12068116; DOI=10.1104/pp.010926;
RA   Shuai B., Reynaga-Pena C.G., Springer P.S.;
RT   "The LATERAL ORGAN BOUNDARIES gene defines a novel, plant-specific gene
RT   family.";
RL   Plant Physiol. 129:747-761(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=19154202; DOI=10.1111/j.1365-313x.2009.03797.x;
RA   Matsumura Y., Iwakawa H., Machida Y., Machida C.;
RT   "Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN
RT   BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and
RT   molecular comparisons between AS2 and other family members.";
RL   Plant J. 58:525-537(2009).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130713; DOI=10.1038/35048706;
RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA   Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA   Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA   Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA   Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA   Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA   Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA   Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA   Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA   Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA   Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA   Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA   de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA   Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA   Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA   Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA   Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA   Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA   Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA   Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA   Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA   Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA   Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL   Nature 408:820-822(2000).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Shinn P., Chen H., Kim C.J., Ecker J.R.;
RT   "Arabidopsis ORF clones.";
RL   Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
RN   [6]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=12040093; DOI=10.1093/pcp/pcf077;
RA   Iwakawa H., Ueno Y., Semiarti E., Onouchi H., Kojima S., Tsukaya H.,
RA   Hasebe M., Soma T., Ikezaki M., Machida C., Machida Y.;
RT   "The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for
RT   formation of a symmetric flat leaf lamina, encodes a member of a novel
RT   family of proteins characterized by cysteine repeats and a leucine
RT   zipper.";
RL   Plant Cell Physiol. 43:467-478(2002).
RN   [7]
RP   INDUCTION BY AUXIN.
RX   PubMed=15659631; DOI=10.1105/tpc.104.028316;
RA   Okushima Y., Overvoorde P.J., Arima K., Alonso J.M., Chan A., Chang C.,
RA   Ecker J.R., Hughes B., Lui A., Nguyen D., Onodera C., Quach H., Smith A.,
RA   Yu G., Theologis A.;
RT   "Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family
RT   members in Arabidopsis thaliana: unique and overlapping functions of ARF7
RT   and ARF19.";
RL   Plant Cell 17:444-463(2005).
RN   [8]
RP   FUNCTION, AND INDUCTION BY AUXIN.
RX   PubMed=17259263; DOI=10.1105/tpc.106.047761;
RA   Okushima Y., Fukaki H., Onoda M., Theologis A., Tasaka M.;
RT   "ARF7 and ARF19 regulate lateral root formation via direct activation of
RT   LBD/ASL genes in Arabidopsis.";
RL   Plant Cell 19:118-130(2007).
CC   -!- FUNCTION: Involved in lateral root formation. Regulated by the
CC       transcriptional activators ARF7 and ARF19.
CC       {ECO:0000269|PubMed:17259263}.
CC   -!- TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
CC   -!- INDUCTION: By auxin. {ECO:0000269|PubMed:15659631,
CC       ECO:0000269|PubMed:17259263}.
CC   -!- SIMILARITY: Belongs to the LOB domain-containing protein family.
CC       {ECO:0000305}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AF447893; AAL38038.1; -; mRNA.
DR   EMBL; AB473849; BAH10560.1; -; mRNA.
DR   EMBL; AL137081; CAB68157.1; -; Genomic_DNA.
DR   EMBL; CP002686; AEE79752.1; -; Genomic_DNA.
DR   EMBL; BT025282; ABF19035.1; -; mRNA.
DR   PIR; T45979; T45979.
DR   RefSeq; NP_191378.1; NM_115681.3.
DR   AlphaFoldDB; Q9M2J7; -.
DR   SMR; Q9M2J7; -.
DR   BioGRID; 10303; 3.
DR   STRING; 3702.AT3G58190.1; -.
DR   PaxDb; Q9M2J7; -.
DR   PRIDE; Q9M2J7; -.
DR   EnsemblPlants; AT3G58190.1; AT3G58190.1; AT3G58190.
DR   GeneID; 824988; -.
DR   Gramene; AT3G58190.1; AT3G58190.1; AT3G58190.
DR   KEGG; ath:AT3G58190; -.
DR   Araport; AT3G58190; -.
DR   TAIR; locus:2085420; AT3G58190.
DR   eggNOG; ENOG502QUV3; Eukaryota.
DR   HOGENOM; CLU_058353_3_1_1; -.
DR   InParanoid; Q9M2J7; -.
DR   OMA; HHHDQTH; -.
DR   OrthoDB; 1335565at2759; -.
DR   PhylomeDB; Q9M2J7; -.
DR   PRO; PR:Q9M2J7; -.
DR   Proteomes; UP000006548; Chromosome 3.
DR   ExpressionAtlas; Q9M2J7; baseline and differential.
DR   Genevisible; Q9M2J7; AT.
DR   GO; GO:0005634; C:nucleus; IDA:TAIR.
DR   GO; GO:1990110; P:callus formation; IMP:TAIR.
DR   GO; GO:0009755; P:hormone-mediated signaling pathway; IBA:GO_Central.
DR   GO; GO:0010311; P:lateral root formation; IMP:TAIR.
DR   GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR   InterPro; IPR004883; LOB.
DR   Pfam; PF03195; LOB; 1.
DR   PROSITE; PS50891; LOB; 1.
PE   2: Evidence at transcript level;
KW   Reference proteome.
FT   CHAIN           1..218
FT                   /note="LOB domain-containing protein 29"
FT                   /id="PRO_0000132280"
FT   DOMAIN          10..112
FT                   /note="LOB"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00291"
SQ   SEQUENCE   218 AA;  24056 MW;  0AA96378B50B8B1F CRC64;
     MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL
     PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN LQAELEILKQ QAAQSMIFAD
     SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS
     SGMGEFSIYS DLEQHLNTFN QDHLKELQSA NFGYISFS