LBD42_ARATH
ID LBD42_ARATH Reviewed; 233 AA.
AC Q9CA30; B7XG90;
DT 28-MAR-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=LOB domain-containing protein 42;
DE AltName: Full=ASYMMETRIC LEAVES 2-like protein 36;
DE Short=AS2-like protein 36;
GN Name=LBD42; Synonyms=ASL36; OrderedLocusNames=At1g68510; ORFNames=T26J14.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=12068116; DOI=10.1104/pp.010926;
RA Shuai B., Reynaga-Pena C.G., Springer P.S.;
RT "The LATERAL ORGAN BOUNDARIES gene defines a novel, plant-specific gene
RT family.";
RL Plant Physiol. 129:747-761(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=19154202; DOI=10.1111/j.1365-313x.2009.03797.x;
RA Matsumura Y., Iwakawa H., Machida Y., Machida C.;
RT "Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN
RT BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and
RT molecular comparisons between AS2 and other family members.";
RL Plant J. 58:525-537(2009).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12040093; DOI=10.1093/pcp/pcf077;
RA Iwakawa H., Ueno Y., Semiarti E., Onouchi H., Kojima S., Tsukaya H.,
RA Hasebe M., Soma T., Ikezaki M., Machida C., Machida Y.;
RT "The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for
RT formation of a symmetric flat leaf lamina, encodes a member of a novel
RT family of proteins characterized by cysteine repeats and a leucine
RT zipper.";
RL Plant Cell Physiol. 43:467-478(2002).
CC -!- INTERACTION:
CC Q9CA30; Q9MAI5: ERF8; NbExp=3; IntAct=EBI-25523506, EBI-2000137;
CC -!- SIMILARITY: Belongs to the LOB domain-containing protein family.
CC {ECO:0000305}.
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DR EMBL; AF447896; AAL38041.1; -; mRNA.
DR EMBL; AB473869; BAH10580.1; -; mRNA.
DR EMBL; AC011915; AAG52389.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34801.1; -; Genomic_DNA.
DR PIR; C96709; C96709.
DR RefSeq; NP_177018.1; NM_105522.5.
DR AlphaFoldDB; Q9CA30; -.
DR BioGRID; 28401; 1.
DR IntAct; Q9CA30; 1.
DR PaxDb; Q9CA30; -.
DR PRIDE; Q9CA30; -.
DR ProteomicsDB; 237083; -.
DR EnsemblPlants; AT1G68510.1; AT1G68510.1; AT1G68510.
DR GeneID; 843180; -.
DR Gramene; AT1G68510.1; AT1G68510.1; AT1G68510.
DR KEGG; ath:AT1G68510; -.
DR Araport; AT1G68510; -.
DR TAIR; locus:2201267; AT1G68510.
DR eggNOG; ENOG502RXPZ; Eukaryota.
DR HOGENOM; CLU_054665_0_1_1; -.
DR InParanoid; Q9CA30; -.
DR OMA; YGHFTLE; -.
DR OrthoDB; 1051260at2759; -.
DR PhylomeDB; Q9CA30; -.
DR PRO; PR:Q9CA30; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CA30; baseline and differential.
DR Genevisible; Q9CA30; AT.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR InterPro; IPR004883; LOB.
DR InterPro; IPR017414; LOBD.
DR Pfam; PF03195; LOB; 1.
DR PIRSF; PIRSF038155; Protein_ASYMMETRIC_LEAVES; 1.
DR PROSITE; PS50891; LOB; 1.
PE 1: Evidence at protein level;
KW Reference proteome.
FT CHAIN 1..233
FT /note="LOB domain-containing protein 42"
FT /id="PRO_0000132292"
FT DOMAIN 3..109
FT /note="LOB"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00291"
SQ SEQUENCE 233 AA; 25543 MW; 2C45977FE043CF85 CRC64;
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH
LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV DAVLNGLPIT HTPLPSASAS
HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM
WQLPSSSATH GYGHFTLENV ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG