LBD_ORYSJ
ID LBD_ORYSJ Reviewed; 259 AA.
AC Q5UG13; Q8H081;
DT 23-MAY-2018, integrated into UniProtKB/Swiss-Prot.
DT 07-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=LOB domain-containing protein CRL1 {ECO:0000305};
DE AltName: Full=Protein ADVENTITIOUS ROOTLESS 1 {ECO:0000303|PubMed:15960615};
DE Short=OsARL1 {ECO:0000303|PubMed:15960615};
DE AltName: Full=Protein CROWN ROOTLESS 1 {ECO:0000303|PubMed:15829602};
GN Name=CRL1 {ECO:0000303|PubMed:15829602};
GN Synonyms=ARL1 {ECO:0000303|PubMed:15960615};
GN OrderedLocusNames=Os03g0149100 {ECO:0000312|EMBL:BAH91996.1},
GN LOC_Os03g05510 {ECO:0000312|EMBL:ABF93994.1};
GN ORFNames=OSJNBb0050N02.10 {ECO:0000312|EMBL:AAN87738.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, INDUCTION BY
RP AUXIN, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Nipponbare;
RX PubMed=15829602; DOI=10.1105/tpc.105.030981;
RA Inukai Y., Sakamoto T., Ueguchi-Tanaka M., Shibata Y., Gomi K., Umemura I.,
RA Hasegawa Y., Ashikari M., Kitano H., Matsuoka M.;
RT "Crown rootless1, which is essential for crown root formation in rice, is a
RT target of an AUXIN RESPONSE FACTOR in auxin signaling.";
RL Plant Cell 17:1387-1396(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBUNIT, HOMODIMERIZATION,
RP SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION, AND DISRUPTION
RP PHENOTYPE.
RX PubMed=15960615; DOI=10.1111/j.1365-313x.2005.02434.x;
RA Liu H., Wang S., Yu X., Yu J., He X., Zhang S., Shou H., Wu P.;
RT "ARL1, a LOB-domain protein required for adventitious root formation in
RT rice.";
RL Plant J. 43:47-56(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP FUNCTION.
RX PubMed=21806801; DOI=10.1186/1471-2164-12-387;
RA Coudert Y., Bes M., Le T.V., Pre M., Guiderdoni E., Gantet P.;
RT "Transcript profiling of crown rootless1 mutant stem base reveals new
RT elements associated with crown root development in rice.";
RL BMC Genomics 12:387-387(2011).
CC -!- FUNCTION: Acts as positive regulator of adventitious (crown) root
CC formation by promoting its initiation (PubMed:15829602,
CC PubMed:15960615). Acts as positive regulator of lateral root formation.
CC Regulated by the auxin response factor and transcriptional activator
CC ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell
CC dedifferentiation, and may promote the initial cell division in the
CC pericycle cells adjacent to the peripheral vascular cylinder at the
CC base of the stem (PubMed:15960615). May act upstream of the gene
CC regulatory network controlling adventitious root (crown) development
CC (PubMed:21806801). {ECO:0000269|PubMed:15829602,
CC ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
CC -!- SUBUNIT: Can form homodimers. {ECO:0000269|PubMed:15960615}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:15960615}.
CC -!- TISSUE SPECIFICITY: Expressed in unelongating basal internodes, at the
CC base of shoot in parenchyma cells adjacent to the peripheral vascular
CC cylinder of the stem, and root pericycle cells (PubMed:15829602).
CC Expressed in lateral and adventitious root primordia, tiller primordia,
CC vascular tissues, scutellum, and young pedicels (PubMed:15960615).
CC {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
CC -!- INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced
CC by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602,
CC ECO:0000269|PubMed:15960615}.
CC -!- DISRUPTION PHENOTYPE: Defective in adventitious (crown) root formation
CC (PubMed:15829602, PubMed:15960615). Reduced lateral root formation
CC (PubMed:15829602). {ECO:0000269|PubMed:15829602,
CC ECO:0000269|PubMed:15960615}.
CC -!- SIMILARITY: Belongs to the LOB domain-containing protein family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAN87738.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB200234; BAD88523.1; -; mRNA.
DR EMBL; AY736375; AAV49505.1; -; mRNA.
DR EMBL; AC105734; AAN87738.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF93994.1; -; Genomic_DNA.
DR EMBL; AP008209; BAH91996.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82305.1; -; Genomic_DNA.
DR RefSeq; XP_015632119.1; XM_015776633.1.
DR AlphaFoldDB; Q5UG13; -.
DR SMR; Q5UG13; -.
DR STRING; 4530.OS03T0149100-00; -.
DR PaxDb; Q5UG13; -.
DR PRIDE; Q5UG13; -.
DR EnsemblPlants; Os03t0149100-01; Os03t0149100-01; Os03g0149100.
DR GeneID; 9271993; -.
DR Gramene; Os03t0149100-01; Os03t0149100-01; Os03g0149100.
DR KEGG; osa:9271993; -.
DR eggNOG; ENOG502QUV3; Eukaryota.
DR HOGENOM; CLU_058353_3_0_1; -.
DR InParanoid; Q5UG13; -.
DR OMA; QSLYHAF; -.
DR OrthoDB; 1335565at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IMP:UniProtKB.
DR GO; GO:0042803; F:protein homodimerization activity; IPI:UniProtKB.
DR GO; GO:0048830; P:adventitious root development; IMP:UniProtKB.
DR GO; GO:0009755; P:hormone-mediated signaling pathway; IBA:GO_Central.
DR GO; GO:0010311; P:lateral root formation; IMP:UniProtKB.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR004883; LOB.
DR Pfam; PF03195; LOB; 1.
DR PROSITE; PS50891; LOB; 1.
PE 1: Evidence at protein level;
KW Developmental protein; Nucleus; Reference proteome.
FT CHAIN 1..259
FT /note="LOB domain-containing protein CRL1"
FT /id="PRO_0000444147"
FT DOMAIN 6..108
FT /note="LOB"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00291"
SQ SEQUENCE 259 AA; 26737 MW; B36BDCB14172AC4A CRC64;
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD
RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAAAAQ GIHHQDVGAT
TKGGYMSAAA TAADDQLGYG GYNQWCGSNG GGAPAASQPG AYSSNGGAGH GHDSITALLA
AGSDYMQHSL YHAFEHSEGA GAVDDGHAAA AAFEAAAESS SCGMAASFAA DESVWRSSSS
GYQDCEDLQS VAYAYLNRS
