LCV3_ARATH
ID LCV3_ARATH Reviewed; 274 AA.
AC F4IQJ6; Q9ZPX6;
DT 04-FEB-2015, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 58.
DE RecName: Full=Protein LIKE COV 3 {ECO:0000303|PubMed:12668628};
GN Name=LCV3 {ECO:0000303|PubMed:12668628};
GN OrderedLocusNames=At2g18460 {ECO:0000312|Araport:AT2G18460};
GN ORFNames=T30D6.3 {ECO:0000312|EMBL:AAD15492.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Landsberg erecta;
RX PubMed=12668628; DOI=10.1242/dev.00441;
RA Parker G., Schofield R., Sundberg B., Turner S.;
RT "Isolation of COV1, a gene involved in the regulation of vascular
RT patterning in the stem of Arabidopsis.";
RL Development 130:2139-2148(2003).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the plant COV1 protein family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD15492.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC006439; AAD15492.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC06770.1; -; Genomic_DNA.
DR EMBL; DQ069818; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; E84564; E84564.
DR RefSeq; NP_179436.3; NM_127402.4.
DR AlphaFoldDB; F4IQJ6; -.
DR PaxDb; F4IQJ6; -.
DR PRIDE; F4IQJ6; -.
DR ProteomicsDB; 250772; -.
DR EnsemblPlants; AT2G18460.1; AT2G18460.1; AT2G18460.
DR GeneID; 816360; -.
DR Gramene; AT2G18460.1; AT2G18460.1; AT2G18460.
DR KEGG; ath:AT2G18460; -.
DR Araport; AT2G18460; -.
DR TAIR; locus:2062131; AT2G18460.
DR eggNOG; ENOG502QRSM; Eukaryota.
DR HOGENOM; CLU_068050_0_1_1; -.
DR InParanoid; F4IQJ6; -.
DR OMA; ACVYVPT; -.
DR OrthoDB; 1076488at2759; -.
DR PRO; PR:F4IQJ6; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; F4IQJ6; baseline and differential.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR007462; COV1-like.
DR PANTHER; PTHR31876; PTHR31876; 1.
DR Pfam; PF04367; DUF502; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..274
FT /note="Protein LIKE COV 3"
FT /id="PRO_0000431901"
FT TOPO_DOM 1..60
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 61..81
FT /note="Helical; Name=1"
FT /evidence="ECO:0000255"
FT TOPO_DOM 82..93
FT /note="Extracellular"
FT /evidence="ECO:0000305"
FT TRANSMEM 94..114
FT /note="Helical; Name=2"
FT /evidence="ECO:0000255"
FT TOPO_DOM 115..274
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
SQ SEQUENCE 274 AA; 30454 MW; B739A5C604BDF333 CRC64;
METRERDLER LIPMHKSGAS PRDVVLSVPP SPLASPIHVA GKEAIYKVIR SWASKKFMTG
CVILLPIAVT FYFTWWFIHF VDGFFSPIYT HLGINMFGLG FVTSITFIFM VGVFMSSWLG
ASVLSIGEWF IKKMPLVSYI YSASKQISGA ISPDQSSGAF KEVAIIRHPH MGEYAFGFIT
STVILRGRAG GEELCCVYVP TNHLYLGDIF LISSKDIIRP NLSVREGIEI VISGGMSIPH
MLTTLDSETI HRMLESFGIL EFGDVCLSLV LAWT