LEA19_ORYSJ
ID LEA19_ORYSJ Reviewed; 200 AA.
AC P0C5A4; P83197; Q0PMA1; Q40696; Q40741; Q65XN9; Q9SBI3;
DT 24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-JUL-2007, sequence version 1.
DT 03-AUG-2022, entry version 65.
DE RecName: Full=Late embryogenesis abundant protein 19 {ECO:0000305};
DE Short=OsLEA19 {ECO:0000303|Ref.7};
DE AltName: Full=Late embryogenesis abundant protein, group 3 {ECO:0000305};
DE Short=LEA-3 {ECO:0000305};
DE AltName: Full=OsLEA3-1 {ECO:0000305};
GN Name=LEA19 {ECO:0000303|Ref.7};
GN Synonyms=LEA {ECO:0000305}, LEA3 {ECO:0000303|PubMed:20039193},
GN LEA3-1 {ECO:0000305};
GN OrderedLocusNames=Os05g0542500 {ECO:0000312|EMBL:BAS95138.1},
GN LOC_Os05g46480 {ECO:0000305};
GN ORFNames=OJ1288_A07.1 {ECO:0000312|EMBL:AAU43988.1},
GN OJ1362_G11.19 {ECO:0000312|EMBL:AAV67829.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1).
RC STRAIN=cv. Lomello; TISSUE=Embryo;
RA Chen P.-W., Chen L.-J.;
RT "A rice embryo-specific cDNA encoding a late embryogenesis abundant group 3
RT protein.";
RL (er) Plant Gene Register PGR96-049(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Lomello;
RA Chen L.J., Wang L.D., Chen P.W.;
RL Submitted (FEB-1998) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX DOI=10.1016/j.plantsci.2006.10.004;
RA Wang X.S., Zhu H.B., Jin G.L., Liu H.L., Wu W.R., Zhu J.;
RT "Genome-scale identification and analysis of LEA genes in rice (Oryza
RT sativa L.).";
RL Plant Sci. 172:414-420(2007).
RN [8]
RP INDUCTION BY ABSCISIC ACID.
RX PubMed=20039193; DOI=10.1007/s11103-009-9592-9;
RA Amir Hossain M., Lee Y., Cho J.I., Ahn C.H., Lee S.K., Jeon J.S., Kang H.,
RA Lee C.H., An G., Park P.B.;
RT "The bZIP transcription factor OsABF1 is an ABA responsive element binding
RT factor that enhances abiotic stress signaling in rice.";
RL Plant Mol. Biol. 72:557-566(2010).
RN [9]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Involved in response to stress.
CC {ECO:0000250|UniProtKB:A2Y720}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=P0C5A4-1; Sequence=Displayed;
CC Name=2;
CC IsoId=P0C5A4-2; Sequence=VSP_027161, VSP_027162, VSP_027163;
CC -!- INDUCTION: Induced by abscisic acid (ABA).
CC {ECO:0000269|PubMed:20039193}.
CC -!- SIMILARITY: Belongs to the LEA type 4 family. {ECO:0000305}.
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DR EMBL; U57641; AAC03364.1; -; mRNA.
DR EMBL; AF046884; AAD02421.1; -; Genomic_DNA.
DR EMBL; AC098833; AAU43988.1; -; Genomic_DNA.
DR EMBL; AC104713; AAV67829.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF18109.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS95138.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS95139.1; -; Genomic_DNA.
DR EMBL; AK063984; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK119713; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T04147; T04147.
DR RefSeq; XP_015637572.1; XM_015782086.1. [P0C5A4-1]
DR AlphaFoldDB; P0C5A4; -.
DR STRING; 4530.OS05T0542500-02; -.
DR PaxDb; P0C5A4; -.
DR PRIDE; P0C5A4; -.
DR EnsemblPlants; Os05t0542500-01; Os05t0542500-01; Os05g0542500. [P0C5A4-2]
DR EnsemblPlants; Os05t0542500-02; Os05t0542500-02; Os05g0542500. [P0C5A4-1]
DR GeneID; 4339480; -.
DR Gramene; Os05t0542500-01; Os05t0542500-01; Os05g0542500. [P0C5A4-2]
DR Gramene; Os05t0542500-02; Os05t0542500-02; Os05g0542500. [P0C5A4-1]
DR KEGG; osa:4339480; -.
DR eggNOG; KOG4744; Eukaryota.
DR HOGENOM; CLU_100093_1_0_1; -.
DR InParanoid; P0C5A4; -.
DR OMA; MDAMATQ; -.
DR PlantReactome; R-OSA-8879007; Response to cold temperature.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR ExpressionAtlas; P0C5A4; baseline and differential.
DR Genevisible; P0C5A4; OS.
PE 2: Evidence at transcript level;
KW Alternative splicing; Coiled coil; Reference proteome; Stress response.
FT CHAIN 1..200
FT /note="Late embryogenesis abundant protein 19"
FT /id="PRO_0000271182"
FT REGION 1..145
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 172..200
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 52..81
FT /evidence="ECO:0000255"
FT COMPBIAS 11..45
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 53..75
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..26
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_027161"
FT VAR_SEQ 150..171
FT /note="ASEQVKSTVVGAKDAVMSTLGM -> VHTGLKAILPPFFFFLRGAEVP (in
FT isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_027162"
FT VAR_SEQ 172..200
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_027163"
FT CONFLICT 61
FT /note="E -> D (in Ref. 2; AAD02421)"
FT /evidence="ECO:0000305"
FT CONFLICT 68
FT /note="E -> D (in Ref. 2; AAD02421)"
FT /evidence="ECO:0000305"
FT CONFLICT 126
FT /note="A -> P (in Ref. 2; AAD02421)"
FT /evidence="ECO:0000305"
FT CONFLICT 193
FT /note="T -> A (in Ref. 9; AK119713)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 200 AA; 20514 MW; 8B28958D33A31199 CRC64;
MASHQDQASY RAGETKAHTE EKAGQVMGAS KDKASEAKDR ASEAAGHAAG KGQDTKEATK
EKAQAAKERA SETAQAAKDK TSSTSQAARD KAAESKDQTG GFLGEKTEQA KQKAAETAGA
AKQKTAETAQ YTKDSAIAGK DKTGSVLQQA SEQVKSTVVG AKDAVMSTLG MTEDEAGTDD
GANKDTSATA AATETTARDH
