LEA29_ARATH
ID LEA29_ARATH Reviewed; 225 AA.
AC Q9LW12; Q42172; Q96271;
DT 30-NOV-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 128.
DE RecName: Full=Late embryogenesis abundant protein 29 {ECO:0000303|PubMed:18318901};
DE AltName: Full=LEA 76 homolog {ECO:0000305};
GN Name=LEA29 {ECO:0000303|PubMed:18318901};
GN Synonyms=LEA76 {ECO:0000303|PubMed:18931353};
GN OrderedLocusNames=At3g15670 {ECO:0000312|Araport:AT3G15670};
GN ORFNames=MSJ11.7 {ECO:0000312|EMBL:BAB02298.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Dry seed;
RA Raynal M.;
RT "A.thaliana mRNA for LEA76 type2 protein.";
RL Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18318901; DOI=10.1186/1471-2164-9-118;
RA Hundertmark M., Hincha D.K.;
RT "LEA (late embryogenesis abundant) proteins and their encoding genes in
RT Arabidopsis thaliana.";
RL BMC Genomics 9:118-118(2008).
RN [6]
RP DEVELOPMENTAL STAGE, AND INDUCTION BY DARK.
RX PubMed=18931353; DOI=10.1093/jxb/ern227;
RA Choy M.K., Sullivan J.A., Theobald J.C., Davies W.J., Gray J.C.;
RT "An Arabidopsis mutant able to green after extended dark periods shows
RT decreased transcripts of seed protein genes and altered sensitivity to
RT abscisic acid.";
RL J. Exp. Bot. 59:3869-3884(2008).
RN [7]
RP SUBCELLULAR LOCATION.
RX PubMed=25005920; DOI=10.1105/tpc.114.127316;
RA Candat A., Paszkiewicz G., Neveu M., Gautier R., Logan D.C.,
RA Avelange-Macherel M.-H., Macherel D.;
RT "The ubiquitous distribution of late embryogenesis abundant proteins across
RT cell compartments in Arabidopsis offers tailored protection against abiotic
RT stress.";
RL Plant Cell 26:3148-3166(2014).
CC -!- FUNCTION: Involved dehydration tolerance.
CC {ECO:0000250|UniProtKB:Q96270}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol {ECO:0000269|PubMed:25005920}.
CC -!- DEVELOPMENTAL STAGE: During seed development, expressed at late
CC embryogenesis and in dry seeds. {ECO:0000269|PubMed:18931353}.
CC -!- INDUCTION: Transiently up-regulated during prolonged dark.
CC {ECO:0000269|PubMed:18931353}.
CC -!- SIMILARITY: Belongs to the LEA type 4 family. {ECO:0000305}.
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DR EMBL; X91912; CAA63006.1; -; mRNA.
DR EMBL; AB017071; BAB02298.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75712.1; -; Genomic_DNA.
DR EMBL; AY040026; AAK64183.1; -; mRNA.
DR EMBL; AY054162; AAL06823.1; -; mRNA.
DR EMBL; AY079410; AAL85141.1; -; mRNA.
DR RefSeq; NP_188188.1; NM_112437.2.
DR AlphaFoldDB; Q9LW12; -.
DR SMR; Q9LW12; -.
DR STRING; 3702.AT3G15670.1; -.
DR iPTMnet; Q9LW12; -.
DR PaxDb; Q9LW12; -.
DR PRIDE; Q9LW12; -.
DR ProMEX; Q9LW12; -.
DR ProteomicsDB; 230350; -.
DR EnsemblPlants; AT3G15670.1; AT3G15670.1; AT3G15670.
DR GeneID; 820810; -.
DR Gramene; AT3G15670.1; AT3G15670.1; AT3G15670.
DR KEGG; ath:AT3G15670; -.
DR Araport; AT3G15670; -.
DR TAIR; locus:2093307; AT3G15670.
DR eggNOG; KOG4744; Eukaryota.
DR HOGENOM; CLU_100093_1_0_1; -.
DR InParanoid; Q9LW12; -.
DR OMA; EDKEHYP; -.
DR OrthoDB; 1531155at2759; -.
DR PhylomeDB; Q9LW12; -.
DR PRO; PR:Q9LW12; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LW12; baseline and differential.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
PE 2: Evidence at transcript level;
KW Cytoplasm; Reference proteome; Repeat; Stress response.
FT CHAIN 1..225
FT /note="Late embryogenesis abundant protein 29"
FT /id="PRO_0000438410"
FT REPEAT 53..63
FT /note="LEA 11-mer repeat"
FT /evidence="ECO:0000305"
FT REPEAT 75..85
FT /note="LEA 11-mer repeat"
FT /evidence="ECO:0000305"
FT REPEAT 97..107
FT /note="LEA 11-mer repeat"
FT /evidence="ECO:0000305"
FT REGION 1..167
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 193..225
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 39..105
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 106..121
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 137..151
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 203..225
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 96..98
FT /note="ETT -> KTM (in Ref. 1; CAA63006)"
FT /evidence="ECO:0000305"
FT CONFLICT 111..115
FT /note="KAREA -> NVREG (in Ref. 1; CAA63006)"
FT /evidence="ECO:0000305"
FT CONFLICT 155
FT /note="T -> A (in Ref. 1; CAA63006)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 225 AA; 24186 MW; 35FB805DB6C632BE CRC64;
MASNQQSYKA GETRGKAQEK TGQAMGTMRD KAEEGRDKTS QTAQTAQQKA HETAQSAKDK
TSQTAQAAQQ KAHETAQSAK EKTSQTAQTA QQKAHETTQA AKEKTSQAGD KAREAKDKAG
SYLSETGEAI KNKAQDAAQY TKETAQGAAQ YTKETAEAGR DKTGGFLSQT GEHVKQMAMG
AADAVKHTFG MATEEEDKEH YPGSTTTTTA TTRTTDPTHQ TYQRK
