LEA41_ARATH
ID LEA41_ARATH Reviewed; 104 AA.
AC Q39084; O23440; Q0WRZ2;
DT 10-MAY-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Late embryogenis abundant protein 41 {ECO:0000303|PubMed:25005920};
DE AltName: Full=Protein DROUGHT-INDUCED 21 {ECO:0000303|PubMed:7823904};
DE Short=AtDI21 {ECO:0000303|PubMed:7823904};
DE Flags: Precursor;
GN Name=LEA41 {ECO:0000303|PubMed:25005920};
GN Synonyms=DI21 {ECO:0000303|PubMed:7823904};
GN OrderedLocusNames=At4g15910 {ECO:0000312|Araport:AT4G15910};
GN ORFNames=dl3995w {ECO:0000312|EMBL:CAB10370.1},
GN FCAALL.235 {ECO:0000312|EMBL:CAB78633.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND INDUCTION BY DROUGHT AND ABSCISIC ACID.
RC STRAIN=cv. Columbia; TISSUE=Root;
RX PubMed=7823904; DOI=10.1007/bf00290128;
RA Gosti F., Bertauche N., Vartanian N., Giraudat J.;
RT "Abscisic acid-dependent and -independent regulation of gene expression by
RT progressive drought in Arabidopsis thaliana.";
RL Mol. Gen. Genet. 246:10-18(1995).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9461215; DOI=10.1038/35140;
RA Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT thaliana.";
RL Nature 391:485-488(1998).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP INDUCTION BY COLD.
RX PubMed=15165189; DOI=10.1111/j.1365-313x.2004.02100.x;
RA Maruyama K., Sakuma Y., Kasuga M., Ito Y., Seki M., Goda H., Shimada Y.,
RA Yoshida S., Shinozaki K., Yamaguchi-Shinozaki K.;
RT "Identification of cold-inducible downstream genes of the Arabidopsis
RT DREB1A/CBF3 transcriptional factor using two microarray systems.";
RL Plant J. 38:982-993(2004).
RN [8]
RP INDUCTION BY COLD.
RX PubMed=16463051; DOI=10.1007/s10142-005-0014-z;
RA Oono Y., Seki M., Satou M., Iida K., Akiyama K., Sakurai T., Fujita M.,
RA Yamaguchi-Shinozaki K., Shinozaki K.;
RT "Monitoring expression profiles of Arabidopsis genes during cold
RT acclimation and deacclimation using DNA microarrays.";
RL Funct. Integr. Genomics 6:212-234(2006).
RN [9]
RP GENE FAMILY.
RX PubMed=18318901; DOI=10.1186/1471-2164-9-118;
RA Hundertmark M., Hincha D.K.;
RT "LEA (late embryogenesis abundant) proteins and their encoding genes in
RT Arabidopsis thaliana.";
RL BMC Genomics 9:118-118(2008).
RN [10]
RP SUBCELLULAR LOCATION, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=25005920; DOI=10.1105/tpc.114.127316;
RA Candat A., Paszkiewicz G., Neveu M., Gautier R., Logan D.C.,
RA Avelange-Macherel M.-H., Macherel D.;
RT "The ubiquitous distribution of late embryogenesis abundant proteins across
RT cell compartments in Arabidopsis offers tailored protection against abiotic
RT stress.";
RL Plant Cell 26:3148-3166(2014).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:25005920}.
CC -!- INDUCTION: Induced by abscisic acid (ABA). Accumulates in roots and, to
CC a lower extent, in leaves during progressive drought in an ABA-
CC dependent manner (PubMed:7823904). Triggered by cold acclimation
CC (PubMed:15165189). {ECO:0000269|PubMed:15165189,
CC ECO:0000269|PubMed:7823904}.
CC -!- SIMILARITY: Belongs to the LEA type 3 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF00107.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=CAB10370.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAB78633.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; X78585; CAA55322.1; -; mRNA.
DR EMBL; Z97339; CAB10370.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161542; CAB78633.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE83665.1; -; Genomic_DNA.
DR EMBL; BT003165; AAO24597.1; -; mRNA.
DR EMBL; AK228151; BAF00107.1; ALT_INIT; mRNA.
DR PIR; H71424; H71424.
DR PIR; S51479; S51479.
DR RefSeq; NP_193326.4; NM_117683.5.
DR AlphaFoldDB; Q39084; -.
DR STRING; 3702.AT4G15910.1; -.
DR PaxDb; Q39084; -.
DR PRIDE; Q39084; -.
DR ProteomicsDB; 230282; -.
DR EnsemblPlants; AT4G15910.1; AT4G15910.1; AT4G15910.
DR GeneID; 827273; -.
DR Gramene; AT4G15910.1; AT4G15910.1; AT4G15910.
DR KEGG; ath:AT4G15910; -.
DR Araport; AT4G15910; -.
DR TAIR; locus:2129795; AT4G15910.
DR eggNOG; ENOG502R7KS; Eukaryota.
DR HOGENOM; CLU_158380_1_1_1; -.
DR InParanoid; Q39084; -.
DR OMA; RVMVGKM; -.
DR OrthoDB; 1583652at2759; -.
DR PhylomeDB; Q39084; -.
DR PRO; PR:Q39084; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q39084; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0009631; P:cold acclimation; IEP:UniProtKB.
DR GO; GO:0009737; P:response to abscisic acid; IDA:UniProtKB.
DR GO; GO:0009409; P:response to cold; IEP:UniProtKB.
DR GO; GO:0009414; P:response to water deprivation; IEP:TAIR.
DR InterPro; IPR004926; LEA_3.
DR PANTHER; PTHR33509; PTHR33509; 1.
DR Pfam; PF03242; LEA_3; 1.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Transit peptide.
FT TRANSIT 1..31
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 32..104
FT /note="Late embryogenis abundant protein 41"
FT /evidence="ECO:0000255"
FT /id="PRO_0000439765"
SQ SEQUENCE 104 AA; 10965 MW; B177279D5B2E5740 CRC64;
MAARSLSGAV KSLCSAASGS LSCSIVLRRS YVATSQNVTA AGLSKGGSTR VMVGKMEQRG
LDQEAESAWG PDPVTGYYRP SNRAAEIDPA ELRELLLKNK AKSF
