LEA50_ARATH
ID LEA50_ARATH Reviewed; 159 AA.
AC Q9FK14;
DT 13-APR-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Late embryogenesis abundant protein 50 {ECO:0000305};
DE Short=LEA 50 {ECO:0000305};
GN OrderedLocusNames=At5g53270 {ECO:0000312|Araport:AT5G53270};
GN ORFNames=K19E1.7 {ECO:0000312|EMBL:BAB09789.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18318901; DOI=10.1186/1471-2164-9-118;
RA Hundertmark M., Hincha D.K.;
RT "LEA (late embryogenesis abundant) proteins and their encoding genes in
RT Arabidopsis thaliana.";
RL BMC Genomics 9:118-118(2008).
RN [4]
RP SUBCELLULAR LOCATION, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=25005920; DOI=10.1105/tpc.114.127316;
RA Candat A., Paszkiewicz G., Neveu M., Gautier R., Logan D.C.,
RA Avelange-Macherel M.-H., Macherel D.;
RT "The ubiquitous distribution of late embryogenesis abundant proteins across
RT cell compartments in Arabidopsis offers tailored protection against abiotic
RT stress.";
RL Plant Cell 26:3148-3166(2014).
CC -!- FUNCTION: LEA proteins are late embryonic proteins abundant in higher
CC plant seed embryos. The function of those proteins is not known.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:25005920}. Nucleus
CC {ECO:0000269|PubMed:25005920}.
CC -!- SIMILARITY: Belongs to the LEA type SMP family. {ECO:0000305}.
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DR EMBL; AB013388; BAB09789.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96331.1; -; Genomic_DNA.
DR RefSeq; NP_200139.1; NM_124706.2.
DR AlphaFoldDB; Q9FK14; -.
DR SMR; Q9FK14; -.
DR iPTMnet; Q9FK14; -.
DR PaxDb; Q9FK14; -.
DR PRIDE; Q9FK14; -.
DR EnsemblPlants; AT5G53270.1; AT5G53270.1; AT5G53270.
DR GeneID; 835408; -.
DR Gramene; AT5G53270.1; AT5G53270.1; AT5G53270.
DR KEGG; ath:AT5G53270; -.
DR Araport; AT5G53270; -.
DR TAIR; locus:2154252; AT5G53270.
DR eggNOG; ENOG502R1JD; Eukaryota.
DR HOGENOM; CLU_1549773_0_0_1; -.
DR OMA; KLNCNPC; -.
DR OrthoDB; 1413772at2759; -.
DR PhylomeDB; Q9FK14; -.
DR PRO; PR:Q9FK14; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FK14; baseline and differential.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR InterPro; IPR042971; LEA_SMP.
DR InterPro; IPR007011; LEA_SMP_dom.
DR PANTHER; PTHR31174; PTHR31174; 1.
DR Pfam; PF04927; SMP; 2.
PE 3: Inferred from homology;
KW Cytoplasm; Nucleus; Reference proteome; Repeat.
FT CHAIN 1..159
FT /note="Late embryogenesis abundant protein 50"
FT /id="PRO_0000436063"
FT DOMAIN 30..87
FT /note="SMP 1"
FT /evidence="ECO:0000255"
FT DOMAIN 96..151
FT /note="SMP 2"
FT /evidence="ECO:0000255"
SQ SEQUENCE 159 AA; 16661 MW; C4A0E93F5A6E6C71 CRC64;
MMFGFGLLKQ YAGTTEQIST AAEALVGRST TLTEALKAAA INVGRKPVET TDLAAIKEVE
ARAIGGDIES DGGVTAVASK AVARNQKIGE DNEKTNLGDV IAEIDVKVTR DREVTSEDAE
AVIRAELNHS PFNNIIPGGV AESVTAAYKL NCNPCNVSL
