ARFA_ORYSJ
ID ARFA_ORYSJ Reviewed; 699 AA.
AC Q5NB85; B7ETA0; Q8S975;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=Auxin response factor 1;
DE AltName: Full=OsARF16;
GN Name=ARF1; Synonyms=ARF16; OrderedLocusNames=Os01g0236300, LOC_Os01g13520;
GN ORFNames=P0708G02.26;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 5-699.
RC STRAIN=cv. Nipponbare;
RX PubMed=11922106; DOI=10.1266/ggs.76.373;
RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.;
RT "Auxin response factor family in rice.";
RL Genes Genet. Syst. 76:373-380(2001).
RN [7]
RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE.
RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006;
RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.;
RT "Genome-wide analysis of the auxin response factors (ARF) gene family in
RT rice (Oryza sativa).";
RL Gene 394:13-24(2007).
CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional factors
CC that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the
CC auxin-responsive promoter elements (AuxREs).
CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young
CC panicles. {ECO:0000269|PubMed:17408882}.
CC -!- INDUCTION: By auxin under light or dark conditions.
CC {ECO:0000269|PubMed:17408882}.
CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and Aux/IAA
CC proteins occur through their C-terminal dimerization domains III and
CC IV.
CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AP001539; BAD81271.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04442.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS71229.1; -; Genomic_DNA.
DR EMBL; AK102521; BAG95597.1; -; mRNA.
DR EMBL; AB071300; BAB85920.1; -; mRNA.
DR RefSeq; XP_015622434.1; XM_015766948.1.
DR AlphaFoldDB; Q5NB85; -.
DR SMR; Q5NB85; -.
DR STRING; 4530.OS01T0236300-01; -.
DR PaxDb; Q5NB85; -.
DR PRIDE; Q5NB85; -.
DR EnsemblPlants; Os01t0236300-01; Os01t0236300-01; Os01g0236300.
DR EnsemblPlants; Os01t0236300-02; Os01t0236300-02; Os01g0236300.
DR GeneID; 4327785; -.
DR Gramene; Os01t0236300-01; Os01t0236300-01; Os01g0236300.
DR Gramene; Os01t0236300-02; Os01t0236300-02; Os01g0236300.
DR KEGG; osa:4327785; -.
DR eggNOG; ENOG502QTME; Eukaryota.
DR HOGENOM; CLU_002626_2_2_1; -.
DR InParanoid; Q5NB85; -.
DR OMA; KMSFEGE; -.
DR OrthoDB; 255144at2759; -.
DR PlantReactome; R-OSA-9675508; Root elongation.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q5NB85; baseline and differential.
DR Genevisible; Q5NB85; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR010525; ARF_dom.
DR InterPro; IPR044835; ARF_plant.
DR InterPro; IPR033389; AUX/IAA_dom.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR000270; PB1_dom.
DR PANTHER; PTHR31384; PTHR31384; 1.
DR Pfam; PF02309; AUX_IAA; 1.
DR Pfam; PF06507; Auxin_resp; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
DR PROSITE; PS51745; PB1; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..699
FT /note="Auxin response factor 1"
FT /id="PRO_0000299254"
FT DOMAIN 595..684
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT DNA_BIND 122..224
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 539..565
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 680..699
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 699 AA; 77502 MW; E15605439208D679 CRC64;
MSSQGAGGGV GDPELFAELW RACAGPLVEV PQRDERVFYF LQGHLEQLQE PTDPALLAEQ
IKMFQVPYKI LCKVVNVELK AETETDEVFA QITLQPDPDQ ENLPTLPDPP LPEQPRPVVH
SFCKILTPSD TSTHGGFSVL RRHANECLPP LDMSMATPTQ ELITKDLHGS EWRFKHIYRG
QPRRHLLTTG WSTFVTSKKL ISGDAFVYLR SETGEQRVGV RRLVQKQSTM PASVISSQSM
HLGVLASASH AIKTNSIFLV YYRPRLSQSQ YIVSVNKYLA ASKVGFNVGM RFKMSFEGED
VPVKKFSGTI VGEGDLSLQW SGSEWKSLKV QWDEVTNVNG PERVSPWEIE TCDGTAPAIN
VPLQSATKNK RPREPSETID LQSLEPAQEF WLSGMPQQHE KTGIGSSEPN CISGHQVVWP
GEHPGYGAVS SSVCQNPLVL ESWLKDFNSS NKGVSPTLSE ISQKIFQVTS NEARIATWPA
RSAYQAEEPT SKLSSNTAAC GYRTEEVAPN ASKVVEGKKE PAMFRLFGVD LMKCTSISTT
TDDKSSVGAG EASAKGTGSH EDSGQLSAFS KVTKEHIAAD ESPQEIQSHQ NYTARTRIKV
QMHGNAVGRA VDLANLDGYE QLMNELEEMF NIKDLKQKWK VAFTDDEGDT MEVGDDPWLE
FCQMVRKIVL YPIEDEKKIE PHPKLLSSAN PEQDQKTGF
