ARFB_ORYSJ
ID ARFB_ORYSJ Reviewed; 718 AA.
AC Q0JKI9; Q8S984;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 25-MAY-2022, entry version 90.
DE RecName: Full=Auxin response factor 2;
DE AltName: Full=ETTIN-like protein 2;
DE AltName: Full=OsETTIN2;
GN Name=ARF2; OrderedLocusNames=Os01g0670800, LOC_Os01g48060;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=11922106; DOI=10.1266/ggs.76.373;
RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.;
RT "Auxin response factor family in rice.";
RL Genes Genet. Syst. 76:373-380(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE.
RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006;
RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.;
RT "Genome-wide analysis of the auxin response factors (ARF) gene family in
RT rice (Oryza sativa).";
RL Gene 394:13-24(2007).
CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional factors
CC that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the
CC auxin-responsive promoter elements (AuxREs).
CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young
CC panicles. {ECO:0000269|PubMed:17408882}.
CC -!- INDUCTION: By auxin under dark condition.
CC {ECO:0000269|PubMed:17408882}.
CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}.
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DR EMBL; AB071291; BAB85911.1; -; mRNA.
DR EMBL; AP008207; BAF05739.1; -; Genomic_DNA.
DR EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015647511.1; XM_015792025.1.
DR AlphaFoldDB; Q0JKI9; -.
DR SMR; Q0JKI9; -.
DR STRING; 4530.OS01T0670800-01; -.
DR PaxDb; Q0JKI9; -.
DR PRIDE; Q0JKI9; -.
DR EnsemblPlants; Os01t0670800-02; Os01t0670800-02; Os01g0670800.
DR GeneID; 4325895; -.
DR Gramene; Os01t0670800-02; Os01t0670800-02; Os01g0670800.
DR KEGG; osa:4325895; -.
DR eggNOG; ENOG502QQSY; Eukaryota.
DR HOGENOM; CLU_002626_2_2_1; -.
DR InParanoid; Q0JKI9; -.
DR OrthoDB; 266861at2759; -.
DR PlantReactome; R-OSA-5608118; Auxin signalling.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q0JKI9; baseline and differential.
DR Genevisible; Q0JKI9; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR010525; ARF_dom.
DR InterPro; IPR044835; ARF_plant.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR PANTHER; PTHR31384; PTHR31384; 1.
DR Pfam; PF06507; Auxin_resp; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..718
FT /note="Auxin response factor 2"
FT /id="PRO_0000299255"
FT DNA_BIND 147..249
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 718 AA; 78684 MW; 99B1309E31684D5A CRC64;
MVGIDLNTVE EEEDEEEGGA TGTVTAPAEA RAGGAVCLEL WHACAGPVAP LPRKGSAVVY
LPQGHLEHLG AAPGSGPGAA VPPHVFCRVV DVSLHADAAT DEVYAQVSLV ADNEEVERRM
REGEDGAACD GEGEDAVKRP ARIPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSL
QRPFQELVAK DLHGTEWRFR HIYRGQPRRH LLTTGWSGFI NKKKLVSGDA VLFLRGEDGE
LRLGVRRAAQ LKNASPFPAL HNQISNTSSL SEVAHAVAVK SIFHIYYNPR LSQSEFIIPY
WKFMRSFSQP FSVGMRFKLR YESEDASERR RTGIIIGSRE ADPMWHGSKW KCLVVKWDDD
VECRRPNGVS PWEIELSGSV SGSHLSTPHS KRLKSCFPQV NPDIVLPNGS VSSDFAESAR
FHKVLQGQEL LGLKTRDGTV NTASQATEAR NFQYTDERSC SINMSNNILG VPRLGVKTPS
GNPGFSYHCS GFGESQRFQE VLQGQEVFRP YRGGTLSDAC IRGSGFRQPD GNHAPGAAFK
WLAPQGCDHH GITTSVLPQA SSPSSVLMFP QTSSKMPGLE YIYGCLDRNE NSRHFKIGPT
QDMTRTDQTL RLWPHLISGK VLDECTRNEK LHSPVSGAEH ESNNKCLNTN GCKIFGISLT
EKAQAGDEVD CGNASYHSRL QSLKPQMPKS LGSSCATVHE QRPVVGRVVD ISAVNTMI
