ID   ARFI_ORYSJ              Reviewed;         673 AA.
AC   Q0JCZ4; A0A0P0WAR6; Q7XN92;
DT   11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT   03-OCT-2006, sequence version 1.
DT   03-AUG-2022, entry version 102.
DE   RecName: Full=Auxin response factor 9;
GN   Name=ARF9; OrderedLocusNames=Os04g0442000, LOC_Os04g36054;
GN   ORFNames=OSJNBa0064D20.11;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12447439; DOI=10.1038/nature01183;
RA   Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA   Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA   Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA   Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA   Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA   Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA   Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA   Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA   Li J., Hong G., Xue Y., Han B.;
RT   "Sequence and analysis of rice chromosome 4.";
RL   Nature 420:316-320(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [6]
RP   GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE.
RX   PubMed=17408882; DOI=10.1016/j.gene.2007.01.006;
RA   Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.;
RT   "Genome-wide analysis of the auxin response factors (ARF) gene family in
RT   rice (Oryza sativa).";
RL   Gene 394:13-24(2007).
CC   -!- FUNCTION: Auxin response factors (ARFs) are transcriptional factors
CC       that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the
CC       auxin-responsive promoter elements (AuxREs).
CC   -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC   -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young
CC       panicles. {ECO:0000269|PubMed:17408882}.
CC   -!- DOMAIN: Interactions between auxin response factors (ARFs) and Aux/IAA
CC       proteins occur through their C-terminal dimerization domains III and
CC       IV.
CC   -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=CAE04227.2; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR   EMBL; AL662973; CAE04227.2; ALT_INIT; Genomic_DNA.
DR   EMBL; AP008210; BAF14793.1; -; Genomic_DNA.
DR   EMBL; AP014960; BAS89354.1; -; Genomic_DNA.
DR   EMBL; AK064925; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015636800.1; XM_015781314.1.
DR   AlphaFoldDB; Q0JCZ4; -.
DR   SMR; Q0JCZ4; -.
DR   STRING; 4530.OS04T0442000-01; -.
DR   PaxDb; Q0JCZ4; -.
DR   PRIDE; Q0JCZ4; -.
DR   EnsemblPlants; Os04t0442000-01; Os04t0442000-01; Os04g0442000.
DR   GeneID; 4335934; -.
DR   Gramene; Os04t0442000-01; Os04t0442000-01; Os04g0442000.
DR   KEGG; osa:4335934; -.
DR   eggNOG; ENOG502QQSN; Eukaryota.
DR   HOGENOM; CLU_002626_4_4_1; -.
DR   InParanoid; Q0JCZ4; -.
DR   OMA; LWKPPSE; -.
DR   OrthoDB; 214403at2759; -.
DR   PlantReactome; R-OSA-5608118; Auxin signalling.
DR   Proteomes; UP000000763; Chromosome 4.
DR   Proteomes; UP000059680; Chromosome 4.
DR   Genevisible; Q0JCZ4; OS.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd10017; B3_DNA; 1.
DR   Gene3D; 2.40.330.10; -; 1.
DR   InterPro; IPR010525; ARF_dom.
DR   InterPro; IPR044835; ARF_plant.
DR   InterPro; IPR033389; AUX/IAA_dom.
DR   InterPro; IPR003340; B3_DNA-bd.
DR   InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR   InterPro; IPR000270; PB1_dom.
DR   PANTHER; PTHR31384; PTHR31384; 1.
DR   Pfam; PF02309; AUX_IAA; 2.
DR   Pfam; PF06507; Auxin_resp; 1.
DR   Pfam; PF02362; B3; 1.
DR   SMART; SM01019; B3; 1.
DR   SUPFAM; SSF101936; SSF101936; 1.
DR   PROSITE; PS50863; B3; 1.
DR   PROSITE; PS51745; PB1; 1.
PE   2: Evidence at transcript level;
KW   Auxin signaling pathway; DNA-binding; Nucleus; Reference proteome;
KW   Transcription; Transcription regulation.
FT   CHAIN           1..673
FT                   /note="Auxin response factor 9"
FT                   /id="PRO_0000299263"
FT   DOMAIN          547..639
FT                   /note="PB1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT   DNA_BIND        126..228
FT                   /note="TF-B3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT   REGION          356..386
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          514..545
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        361..377
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        152
FT                   /note="L -> F (in Ref. 5; AK064925)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   673 AA;  74748 MW;  44D5A41A286954C3 CRC64;
     MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ
     QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK
     CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH
     IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS
     SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF
     EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL
     DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFGLWKPPS EAAQTLSFSE PQRAREIFPS
     IPASIFSASS HVEFNSKNEP SILSNQFYWS MRDSKTDSFS ASTNKTRVER KQEPTTMGCR
     LFGIEISSAV EEALPAATVS GVGYDQTVLS VDVDSDQISQ PSNGNKSDAP GTSSERSPLE
     SQSRQVRSCT KVIMQGMAVG RAVDLTKLNG YGDLRSKLEE MFDIQGDLCP TLKRWQVVYT
     DDEDDMMLVG DDPWDEFCSM VKRIYIYSYE EAKLLAPKSK LPVIGDTIKL SSMNSSHESV
     DLDNHASVTN RDC