ARFQ_ARATH
ID ARFQ_ARATH Reviewed; 585 AA.
AC Q84WU6; B2CTG7; B2CTG8; B2CTH0; Q93ZY5; Q9CA12; Q9SH16;
DT 26-APR-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 25-MAY-2022, entry version 127.
DE RecName: Full=Auxin response factor 17;
GN Name=ARF17; OrderedLocusNames=At1g77850; ORFNames=F28K19.6, T32E8.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 375-533, AND VARIANTS PHE-414 AND
RP PRO-518.
RC STRAIN=cv. Ag-0, cv. An-1, cv. Bay-0, cv. Br-0, cv. C24, cv. Ct-1,
RC cv. Cvi-1, cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, cv. Kas-2, cv. Ll-0,
RC cv. Mrk-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, cv. Sorbo,
RC cv. Wa-1, cv. Wassilewskija, cv. Wei-0, and cv. Wt-5;
RX PubMed=18305205; DOI=10.1104/pp.108.116582;
RA Ehrenreich I.M., Purugganan M.D.;
RT "Sequence variation of microRNAs and their binding sites in Arabidopsis.";
RL Plant Physiol. 146:1974-1982(2008).
RN [5]
RP GENE FAMILY, NOMENCLATURE, AND FUNCTION.
RX PubMed=12036261; DOI=10.1023/a:1015207114117;
RA Hagen G., Guilfoyle T.J.;
RT "Auxin-responsive gene expression: genes, promoters and regulatory
RT factors.";
RL Plant Mol. Biol. 49:373-385(2002).
RN [6]
RP GENE FAMILY.
RX PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
RA Swaminathan K., Peterson K., Jack T.;
RT "The plant B3 superfamily.";
RL Trends Plant Sci. 13:647-655(2008).
CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional factors
CC that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the
CC auxin-responsive promoter elements (AuxREs). Could act as
CC transcriptional activator or repressor. Formation of heterodimers with
CC Aux/IAA proteins may alter their ability to modulate early auxin
CC response genes expression. {ECO:0000269|PubMed:12036261}.
CC -!- SUBUNIT: Homo and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus.
CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF17677.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAG51629.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC009243; AAF17677.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC012193; AAG51629.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE36034.1; -; Genomic_DNA.
DR EMBL; AY056184; AAL07033.1; -; mRNA.
DR EMBL; BT002749; AAO22578.1; -; mRNA.
DR EMBL; EU550144; ACB30930.1; -; Genomic_DNA.
DR EMBL; EU550145; ACB30931.1; -; Genomic_DNA.
DR EMBL; EU550146; ACB30932.1; -; Genomic_DNA.
DR EMBL; EU550147; ACB30933.1; -; Genomic_DNA.
DR EMBL; EU550148; ACB30934.1; -; Genomic_DNA.
DR EMBL; EU550149; ACB30935.1; -; Genomic_DNA.
DR EMBL; EU550150; ACB30936.1; -; Genomic_DNA.
DR EMBL; EU550151; ACB30937.1; -; Genomic_DNA.
DR EMBL; EU550152; ACB30938.1; -; Genomic_DNA.
DR EMBL; EU550153; ACB30939.1; -; Genomic_DNA.
DR EMBL; EU550154; ACB30940.1; -; Genomic_DNA.
DR EMBL; EU550155; ACB30941.1; -; Genomic_DNA.
DR EMBL; EU550156; ACB30942.1; -; Genomic_DNA.
DR EMBL; EU550157; ACB30943.1; -; Genomic_DNA.
DR EMBL; EU550158; ACB30944.1; -; Genomic_DNA.
DR EMBL; EU550159; ACB30945.1; -; Genomic_DNA.
DR EMBL; EU550160; ACB30946.1; -; Genomic_DNA.
DR EMBL; EU550161; ACB30947.1; -; Genomic_DNA.
DR EMBL; EU550162; ACB30948.1; -; Genomic_DNA.
DR EMBL; EU550163; ACB30949.1; -; Genomic_DNA.
DR EMBL; EU550164; ACB30950.1; -; Genomic_DNA.
DR EMBL; EU550165; ACB30951.1; -; Genomic_DNA.
DR EMBL; EU550166; ACB30952.1; -; Genomic_DNA.
DR EMBL; EU550167; ACB30953.1; -; Genomic_DNA.
DR PIR; D96808; D96808.
DR RefSeq; NP_001322496.1; NM_001334800.1.
DR RefSeq; NP_565161.1; NM_106434.2.
DR AlphaFoldDB; Q84WU6; -.
DR SMR; Q84WU6; -.
DR BioGRID; 29339; 8.
DR IntAct; Q84WU6; 4.
DR STRING; 3702.AT1G77850.1; -.
DR PaxDb; Q84WU6; -.
DR ProteomicsDB; 241025; -.
DR EnsemblPlants; AT1G77850.1; AT1G77850.1; AT1G77850.
DR GeneID; 844120; -.
DR Gramene; AT1G77850.1; AT1G77850.1; AT1G77850.
DR KEGG; ath:AT1G77850; -.
DR Araport; AT1G77850; -.
DR TAIR; locus:2029436; AT1G77850.
DR eggNOG; ENOG502QVP0; Eukaryota.
DR HOGENOM; CLU_002626_3_3_1; -.
DR InParanoid; Q84WU6; -.
DR OMA; GHMEHAS; -.
DR OrthoDB; 383077at2759; -.
DR PhylomeDB; Q84WU6; -.
DR PRO; PR:Q84WU6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q84WU6; baseline and differential.
DR Genevisible; Q84WU6; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000987; F:cis-regulatory region sequence-specific DNA binding; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0003690; F:double-stranded DNA binding; IDA:TAIR.
DR GO; GO:0048830; P:adventitious root development; IMP:TAIR.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IMP:TAIR.
DR GO; GO:0009734; P:auxin-activated signaling pathway; TAS:TAIR.
DR GO; GO:0052543; P:callose deposition in cell wall; IMP:TAIR.
DR GO; GO:0009555; P:pollen development; IMP:TAIR.
DR GO; GO:0010208; P:pollen wall assembly; IMP:TAIR.
DR GO; GO:0120195; P:positive regulation of anther dehiscence; IMP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR010525; ARF_dom.
DR InterPro; IPR044835; ARF_plant.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR PANTHER; PTHR31384; PTHR31384; 1.
DR Pfam; PF06507; Auxin_resp; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..585
FT /note="Auxin response factor 17"
FT /id="PRO_0000111521"
FT DNA_BIND 119..221
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 483..517
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 535..585
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 485..512
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 541..556
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 557..585
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VARIANT 414
FT /note="Y -> F (in strain: cv. Ag-0, cv. An-1, cv. Cvi-0,
FT cv. Edi-0, cv. Kas-2, cv. Ll-0, cv. Nok-3, cv.
FT Wassilewskija, cv. Wei-0 and cv. Wt-5)"
FT /evidence="ECO:0000269|PubMed:18305205"
FT VARIANT 518
FT /note="S -> P (in strain: cv. Ag-0, cv. An-1, cv. Cvi-0,
FT cv. Edi-0, cv. Ei-2, cv. Gy-2, cv. Kas-2, cv. Ll-0, cv. Mt-
FT 0, cv. Nok-3, cv. Wassilewskija, cv. Wei-0 and cv. Wt-5)"
FT /evidence="ECO:0000269|PubMed:18305205"
FT CONFLICT 102
FT /note="R -> Q (in Ref. 3; AAL07033)"
FT /evidence="ECO:0000305"
FT CONFLICT 456
FT /note="G -> R (in Ref. 3; AAL07033)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 585 AA; 63742 MW; C36984B4326B8620 CRC64;
MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST
SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY SRFGRFDGDV DDNNKVTTFA
KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR
RHLLTTGWSK FVNSKKLIAG DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY
YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD
EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP GGGFLSGDDG EILYPQSGLS
SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV
STEMMNFGSP PSDNLSPNSN TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG
PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
