ID   ARFS_ORYSJ              Reviewed;        1161 AA.
AC   Q0D9R7; Q5Z826; Q8S979;
DT   11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT   11-SEP-2007, sequence version 2.
DT   03-AUG-2022, entry version 94.
DE   RecName: Full=Auxin response factor 19;
DE   AltName: Full=OsARF7a;
GN   Name=ARF19; Synonyms=ARF7A; OrderedLocusNames=Os06g0702600, LOC_Os06g48950;
GN   ORFNames=OJ1215_E11.1, P0596H10.43;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 39-1161 (ISOFORM 1).
RC   STRAIN=cv. Nipponbare;
RX   PubMed=11922106; DOI=10.1266/ggs.76.373;
RA   Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.;
RT   "Auxin response factor family in rice.";
RL   Genes Genet. Syst. 76:373-380(2001).
RN   [6]
RP   GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE.
RX   PubMed=17408882; DOI=10.1016/j.gene.2007.01.006;
RA   Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.;
RT   "Genome-wide analysis of the auxin response factors (ARF) gene family in
RT   rice (Oryza sativa).";
RL   Gene 394:13-24(2007).
CC   -!- FUNCTION: Auxin response factors (ARFs) are transcriptional factors
CC       that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the
CC       auxin-responsive promoter elements (AuxREs).
CC   -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q0D9R7-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q0D9R7-2; Sequence=VSP_039448;
CC   -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young
CC       panicles. {ECO:0000269|PubMed:17408882}.
CC   -!- DOMAIN: Interactions between auxin response factors (ARFs) and Aux/IAA
CC       proteins occur through their C-terminal dimerization domains III and
CC       IV.
CC   -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}.
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DR   EMBL; AP003726; BAD53792.1; -; Genomic_DNA.
DR   EMBL; AP004324; BAD54030.1; -; Genomic_DNA.
DR   EMBL; AP008212; BAF20406.2; -; Genomic_DNA.
DR   EMBL; AP014962; BAS99363.1; -; Genomic_DNA.
DR   EMBL; AK103312; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; AB071296; BAB85916.1; -; mRNA.
DR   RefSeq; XP_015643493.1; XM_015788007.1. [Q0D9R7-1]
DR   AlphaFoldDB; Q0D9R7; -.
DR   SMR; Q0D9R7; -.
DR   STRING; 39947.Q0D9R7; -.
DR   PaxDb; Q0D9R7; -.
DR   PRIDE; Q0D9R7; -.
DR   EnsemblPlants; Os06t0702600-01; Os06t0702600-01; Os06g0702600. [Q0D9R7-2]
DR   GeneID; 4341978; -.
DR   Gramene; Os06t0702600-01; Os06t0702600-01; Os06g0702600. [Q0D9R7-2]
DR   KEGG; osa:4341978; -.
DR   eggNOG; ENOG502QV9B; Eukaryota.
DR   InParanoid; Q0D9R7; -.
DR   OMA; RGRIGWK; -.
DR   OrthoDB; 116399at2759; -.
DR   PlantReactome; R-OSA-9030654; Primary root development.
DR   Proteomes; UP000000763; Chromosome 6.
DR   Proteomes; UP000059680; Chromosome 6.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd10017; B3_DNA; 1.
DR   Gene3D; 2.40.330.10; -; 1.
DR   InterPro; IPR010525; ARF_dom.
DR   InterPro; IPR044835; ARF_plant.
DR   InterPro; IPR033389; AUX/IAA_dom.
DR   InterPro; IPR003340; B3_DNA-bd.
DR   InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR   InterPro; IPR000270; PB1_dom.
DR   PANTHER; PTHR31384; PTHR31384; 1.
DR   Pfam; PF02309; AUX_IAA; 1.
DR   Pfam; PF06507; Auxin_resp; 1.
DR   Pfam; PF02362; B3; 1.
DR   SMART; SM01019; B3; 1.
DR   SUPFAM; SSF101936; SSF101936; 1.
DR   PROSITE; PS50863; B3; 1.
DR   PROSITE; PS51745; PB1; 1.
PE   2: Evidence at transcript level;
KW   Alternative splicing; Auxin signaling pathway; DNA-binding; Nucleus;
KW   Reference proteome; Transcription; Transcription regulation.
FT   CHAIN           1..1161
FT                   /note="Auxin response factor 19"
FT                   /id="PRO_0000299278"
FT   DOMAIN          1027..1111
FT                   /note="PB1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT   DNA_BIND        154..256
FT                   /note="TF-B3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT   REGION          1..20
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          573..598
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..16
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   VAR_SEQ         721..890
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:12869764"
FT                   /id="VSP_039448"
FT   CONFLICT        241
FT                   /note="V -> I (in Ref. 4; AK103312)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   1161 AA;  128283 MW;  DEF1C16AB919CF41 CRC64;
     MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV
     SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV
     YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF
     PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF
     VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP
     TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR
     NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA
     MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SLSNPNMQNL
     GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD
     ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ
     QQQQQQQQQQ QQQQQQQKLL QQQQQQLLLQ QQQQLSKMPA QLSSLANQQF QLTDQQLQLQ
     LLQKLQQQQQ SLLSQPAVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLSQQQ MMPQQSTKVP
     SQNTPLPLPV QQEPQQKLLQ KQAMLADTSE AAVPPTTSVN VISTTGSPLM TTGATHSVLT
     EEIPSCSTSP STANGNHLLQ PILGRNKHCS MINTEKVPQS AAPMSVPSSL EAVTATPRMM
     KDSPKLNHNV KQSVVASKLA NAGTGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHQN
     FPMSNFNQPQ MFKDAPPDAE IHAANTSNNA LFGINGDGPL GFPIGLGTDD FLSNGIDAAK
     YENHISTEID NSYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSTINDGG FLNRSSWPPA
     APLKRMRTFT KVYKRGAVGR SIDMSQFSGY DELKHALARM FSIEGQLEER QRIGWKLVYK
     DHEDDILLLG DDPWEEFVGC VKCIRILSPQ EVQQMSLEGC DLGNNIPPNQ ACSSSDGGNA
     WRARCDQNSG NPSNGSYEQF E