ARFU_ORYSJ
ID ARFU_ORYSJ Reviewed; 1116 AA.
AC Q6YZW0; Q0J4D1; Q8S978;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 11-SEP-2007, sequence version 2.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Auxin response factor 21;
DE AltName: Full=OsARF7b;
GN Name=ARF21; Synonyms=ARF7B; OrderedLocusNames=Os08g0520500, LOC_Os08g40900;
GN ORFNames=OJ1003_A09.14, P0689E12.38;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-637 (ISOFORM 1).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 18-1113 (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=11922106; DOI=10.1266/ggs.76.373;
RA Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H.-Y., Matsuoka M.;
RT "Auxin response factor family in rice.";
RL Genes Genet. Syst. 76:373-380(2001).
RN [6]
RP GENE FAMILY, TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE.
RX PubMed=17408882; DOI=10.1016/j.gene.2007.01.006;
RA Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.;
RT "Genome-wide analysis of the auxin response factors (ARF) gene family in
RT rice (Oryza sativa).";
RL Gene 394:13-24(2007).
CC -!- FUNCTION: Auxin response factors (ARFs) are transcriptional factors
CC that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the
CC auxin-responsive promoter elements (AuxREs).
CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6YZW0-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6YZW0-2; Sequence=VSP_027593;
CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young
CC panicles. {ECO:0000269|PubMed:17408882}.
CC -!- INDUCTION: By auxin under dark condition. Down-regulated by auxin under
CC light condition. {ECO:0000269|PubMed:17408882}.
CC -!- DOMAIN: Interactions between auxin response factors (ARFs) and Aux/IAA
CC proteins occur through their C-terminal dimerization domains III and
CC IV.
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to competing acceptor splice
CC site. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF24182.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004622; BAD09704.1; -; Genomic_DNA.
DR EMBL; AP005509; BAD10439.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF24182.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014964; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK111639; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AB071297; BAB85917.1; -; mRNA.
DR RefSeq; XP_015649755.1; XM_015794269.1. [Q6YZW0-1]
DR AlphaFoldDB; Q6YZW0; -.
DR SMR; Q6YZW0; -.
DR STRING; 4530.OS08T0520550-01; -.
DR PaxDb; Q6YZW0; -.
DR PRIDE; Q6YZW0; -.
DR GeneID; 4346065; -.
DR KEGG; osa:4346065; -.
DR eggNOG; ENOG502QV9B; Eukaryota.
DR HOGENOM; CLU_002626_2_3_1; -.
DR InParanoid; Q6YZW0; -.
DR OrthoDB; 116399at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q6YZW0; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR010525; ARF_dom.
DR InterPro; IPR044835; ARF_plant.
DR InterPro; IPR033389; AUX/IAA_dom.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR000270; PB1_dom.
DR PANTHER; PTHR31384; PTHR31384; 1.
DR Pfam; PF02309; AUX_IAA; 1.
DR Pfam; PF06507; Auxin_resp; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
DR PROSITE; PS51745; PB1; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Auxin signaling pathway; DNA-binding; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..1116
FT /note="Auxin response factor 21"
FT /id="PRO_0000299280"
FT DOMAIN 998..1082
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT DNA_BIND 132..234
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 763..812
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 764..812
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 107..109
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:11922106"
FT /id="VSP_027593"
FT CONFLICT 132
FT /note="F -> L (in Ref. 4; AK111639)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 1116 AA; 123716 MW; 2C384F461515D1DC CRC64;
MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR
KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL
ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL
SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE
IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV
PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ
FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN
IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ
QPHVQHQQIP QQLHHQQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ
MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT
QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGRQ LLKTDDVPST STSPSTNSNP
VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEQRPATGQ
DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR
NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH
SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG
YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP
QEEMQMRLVG DFGDSFLPNQ ACSSSDGGHP WRITGD
