ID   ARFV_ORYSJ              Reviewed;         698 AA.
AC   Q9AV47; A0A0P0XVF4; Q7XDB4;
DT   11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT   01-JUN-2001, sequence version 1.
DT   25-MAY-2022, entry version 123.
DE   RecName: Full=Auxin response factor 22;
GN   Name=ARF22; OrderedLocusNames=Os10g0479900, LOC_Os10g33940;
GN   ORFNames=OSJNBa0093B11.2;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12791992; DOI=10.1126/science.1083523;
RA   Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA   Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA   Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA   Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA   Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA   Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA   Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA   Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA   Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA   Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA   Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA   Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA   Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA   Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA   Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA   Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA   Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT   "In-depth view of structure, activity, and evolution of rice chromosome
RT   10.";
RL   Science 300:1566-1569(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RG   The rice full-length cDNA consortium;
RT   "Oryza sativa full length cDNA.";
RL   Submitted (NOV-2008) to the EMBL/GenBank/DDBJ databases.
RN   [6]
RP   GENE FAMILY, TISSUE SPECIFICITY, AND NOMENCLATURE.
RX   PubMed=17408882; DOI=10.1016/j.gene.2007.01.006;
RA   Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.;
RT   "Genome-wide analysis of the auxin response factors (ARF) gene family in
RT   rice (Oryza sativa).";
RL   Gene 394:13-24(2007).
CC   -!- FUNCTION: Auxin response factors (ARFs) are transcriptional factors
CC       that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the
CC       auxin-responsive promoter elements (AuxREs).
CC   -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326}.
CC   -!- TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young
CC       panicles. {ECO:0000269|PubMed:17408882}.
CC   -!- DOMAIN: Interactions between auxin response factors (ARFs) and Aux/IAA
CC       proteins occur through their C-terminal dimerization domains III and
CC       IV.
CC   -!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAP54297.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=BAF26786.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AC024594; AAK21342.1; -; Genomic_DNA.
DR   EMBL; DP000086; AAP54297.2; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP008216; BAF26786.2; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP014966; BAT11328.1; -; Genomic_DNA.
DR   EMBL; AK318617; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015614842.1; XM_015759356.1.
DR   AlphaFoldDB; Q9AV47; -.
DR   SMR; Q9AV47; -.
DR   STRING; 4530.OS10T0479900-01; -.
DR   PaxDb; Q9AV47; -.
DR   PRIDE; Q9AV47; -.
DR   EnsemblPlants; Os10t0479900-01; Os10t0479900-01; Os10g0479900.
DR   GeneID; 4348918; -.
DR   Gramene; Os10t0479900-01; Os10t0479900-01; Os10g0479900.
DR   KEGG; osa:4348918; -.
DR   eggNOG; ENOG502QQ5I; Eukaryota.
DR   HOGENOM; CLU_002626_3_5_1; -.
DR   InParanoid; Q9AV47; -.
DR   OMA; ACGGMEC; -.
DR   OrthoDB; 216379at2759; -.
DR   PlantReactome; R-OSA-5608118; Auxin signalling.
DR   Proteomes; UP000000763; Chromosome 10.
DR   Proteomes; UP000059680; Chromosome 10.
DR   Genevisible; Q9AV47; OS.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd10017; B3_DNA; 1.
DR   Gene3D; 2.40.330.10; -; 1.
DR   InterPro; IPR010525; ARF_dom.
DR   InterPro; IPR044835; ARF_plant.
DR   InterPro; IPR003340; B3_DNA-bd.
DR   InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR   InterPro; IPR000270; PB1_dom.
DR   PANTHER; PTHR31384; PTHR31384; 1.
DR   Pfam; PF06507; Auxin_resp; 1.
DR   Pfam; PF02362; B3; 1.
DR   SMART; SM01019; B3; 1.
DR   SUPFAM; SSF101936; SSF101936; 1.
DR   PROSITE; PS50863; B3; 1.
DR   PROSITE; PS51745; PB1; 1.
PE   2: Evidence at transcript level;
KW   Auxin signaling pathway; DNA-binding; Nucleus; Reference proteome;
KW   Transcription; Transcription regulation.
FT   CHAIN           1..698
FT                   /note="Auxin response factor 22"
FT                   /id="PRO_0000299281"
FT   DOMAIN          603..683
FT                   /note="PB1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT   DNA_BIND        128..230
FT                   /note="TF-B3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT   REGION          549..579
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   698 AA;  75610 MW;  E639D3A5502717F9 CRC64;
     MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAAELG
     PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDAAEP
     SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF
     RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM
     SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV
     AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN
     RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF
     PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH
     SGSFNRLDAI TPPSRISKGF VVSSAPAHDN ISCLLSISTP QVAEKSDDRK TTPHIMLFGK
     AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG
     LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH
     PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA