LFR_ORYSJ
ID LFR_ORYSJ Reviewed; 460 AA.
AC Q6YTW6; A0A0P0X8P5; Q94LM4;
DT 07-APR-2021, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Armadillo repeat-containing protein LFR {ECO:0000305};
DE AltName: Full=Protein LFR ortholog {ECO:0000303|PubMed:32808364};
DE Short=OsLFR {ECO:0000303|PubMed:32808364};
GN Name=LFR {ECO:0000303|PubMed:32808364};
GN OrderedLocusNames=Os07g0609766 {ECO:0000312|EMBL:BAH94023.1},
GN LOC_Os07g41900 {ECO:0000305};
GN ORFNames=OSJNBb0018L13.27 {ECO:0000312|EMBL:BAC84651.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP FUNCTION, INTERACTION WITH CHR719; SWI3A AND SWI3C, SUBCELLULAR LOCATION,
RP TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=32808364; DOI=10.1111/tpj.14967;
RA Qi D., Wen Q., Meng Z., Yuan S., Guo H., Zhao H., Cui S.;
RT "OsLFR is essential for early endosperm and embryo development by
RT interacting with SWI/SNF complex members in Oryza sativa.";
RL Plant J. 104:901-916(2020).
CC -!- FUNCTION: Plays critical roles in both embryo and endosperm development
CC (PubMed:32808364). Required for free nuclei division and
CC cellularization in early endosperm development, by preventing premature
CC cell death in the endosperm (PubMed:32808364). Involved in the
CC regulation of pattern formation and organ differentiation during
CC embryogenesis, by regulating genes involved in the early stages of seed
CC development (PubMed:32808364). {ECO:0000269|PubMed:32808364}.
CC -!- SUBUNIT: Interacts with CHR719, SWI3A and SWI3C.
CC {ECO:0000269|PubMed:32808364}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:32808364}.
CC -!- TISSUE SPECIFICITY: Expressed at low levels in coleoptiles, leaf
CC tongues, mature leaves and nodes during the vegetative phase
CC (PubMed:32808364). Highly expressed in reproductive tissues such as
CC young panicles, early developing seeds, embryos and endosperms
CC (PubMed:32808364). {ECO:0000269|PubMed:32808364}.
CC -!- DISRUPTION PHENOTYPE: Embryonic lethality when homozygous due to
CC defects in endosperm and embryo. {ECO:0000269|PubMed:32808364}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAT02600.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC079038; AAK55772.1; -; Genomic_DNA.
DR EMBL; AP005895; BAC84651.1; -; Genomic_DNA.
DR EMBL; AP008213; BAH94023.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02600.1; ALT_SEQ; Genomic_DNA.
DR RefSeq; XP_015644730.1; XM_015789244.1.
DR AlphaFoldDB; Q6YTW6; -.
DR SMR; Q6YTW6; -.
DR STRING; 4530.OS07T0609766-00; -.
DR EnsemblPlants; Os07t0609766-00; Os07t0609766-00; Os07g0609766.
DR GeneID; 9271563; -.
DR Gramene; Os07t0609766-00; Os07t0609766-00; Os07g0609766.
DR KEGG; osa:9271563; -.
DR eggNOG; ENOG502QU15; Eukaryota.
DR InParanoid; Q6YTW6; -.
DR OrthoDB; 776394at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0035060; C:brahma complex; IEA:InterPro.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0016514; C:SWI/SNF complex; IEA:InterPro.
DR GO; GO:0006338; P:chromatin remodeling; IEA:InterPro.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:UniProtKB.
DR GO; GO:2000014; P:regulation of endosperm development; IMP:UniProtKB.
DR GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR GO; GO:0051783; P:regulation of nuclear division; IMP:UniProtKB.
DR Gene3D; 1.25.10.10; -; 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR021906; BAF250/Osa.
DR InterPro; IPR033388; BAF250_C.
DR PANTHER; PTHR12656; PTHR12656; 1.
DR Pfam; PF12031; BAF250_C; 1.
DR SUPFAM; SSF48371; SSF48371; 1.
PE 1: Evidence at protein level;
KW Developmental protein; Growth regulation; Nucleus; Reference proteome;
KW Repeat.
FT CHAIN 1..460
FT /note="Armadillo repeat-containing protein LFR"
FT /id="PRO_0000452394"
FT REPEAT 225..267
FT /note="ARM 1"
FT /evidence="ECO:0000255"
FT REPEAT 321..360
FT /note="ARM 2"
FT /evidence="ECO:0000255"
FT REPEAT 364..405
FT /note="ARM 3"
FT /evidence="ECO:0000255"
FT REGION 1..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 460 AA; 50005 MW; 8CFCEC9231977779 CRC64;
MSHVRSAPAG KSGGGGGSTP AKRGRPFGST TGSGAAAAAA AAAIGDAAAP AALVGPSLQV
LTALSDQNNK RIVLALQSGL KSEILWALNA LTVLSFKEKD DLRRDTTPLA KVPGLLDALL
QVIDDWRDIA MPKDHTKPPR VRTLGVNTTL SGFGHENVEK VYSDTTTPSD DQTKTADSTV
TKKRSAGFLF DEEGLFNVDD EGRTEKQQCA VAASNIIRNF SFMPENETVM VQHRHCLETV
FQCLEDQNTE DDELITNMLE TLVNLAPVLD LRIFSSSKPS FIKITEKRAV QAIMGMLASS
IRVWHCAAAE LIGRLIINPD NEPFLLPAIP QIYKRLVDLL SVPAVDAQAA AISALYNVAE
VNMDFRLKLA SERWAVDRLL KVVKTPHPVP EVCRKASMIV ESLVSEPQNR MHLLVHENTF
AEILTSEGKY SDTFARILYE LTARPSNKVT AGQAIWGNIN
