LG2_ORYSJ
ID LG2_ORYSJ Reviewed; 539 AA.
AC Q5N7C7;
DT 07-SEP-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 129.
DE RecName: Full=Transcription factor LG2 {ECO:0000305};
DE AltName: Full=Protein LIGULELESS 2 homolog {ECO:0000305};
DE Short=OsLG2 {ECO:0000303|PubMed:17594063};
DE Short=rLG2 {ECO:0000303|PubMed:24919709};
DE AltName: Full=bZIP transcription factor 11 {ECO:0000303|PubMed:18065552};
DE Short=OsbZIP11 {ECO:0000303|PubMed:18065552};
GN Name=LG2 {ECO:0000303|PubMed:17594063};
GN OrderedLocusNames=Os01g0859500 {ECO:0000312|EMBL:BAF06782.1},
GN LOC_Os01g64020 {ECO:0000305};
GN ORFNames=OsJ_04144 {ECO:0000312|EMBL:EEE55708.1},
GN P0489B03.13 {ECO:0000312|EMBL:BAD82625.1},
GN P0679C12.3 {ECO:0000312|EMBL:BAD82019.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|EMBL:BAD82625.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP DISRUPTION PHENOTYPE.
RX PubMed=17594063; DOI=10.1007/s11103-007-9196-1;
RA Lee J., Park J.-J., Kim S.L., Yim J., An G.;
RT "Mutations in the rice liguleless gene result in a complete loss of the
RT auricle, ligule, and laminar joint.";
RL Plant Mol. Biol. 65:487-499(2007).
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18065552; DOI=10.1104/pp.107.112821;
RA Nijhawan A., Jain M., Tyagi A.K., Khurana J.P.;
RT "Genomic survey and gene expression analysis of the basic leucine zipper
RT transcription factor family in rice.";
RL Plant Physiol. 146:333-350(2008).
RN [9]
RP FUNCTION.
RX PubMed=22353606; DOI=10.1186/1746-4811-8-6;
RA Chern M., Bai W., Sze-To W.H., Canlas P.E., Bartley L.E., Ronald P.C.;
RT "A rice transient assay system identifies a novel domain in NRR required
RT for interaction with NH1/OsNPR1 and inhibition of NH1-mediated
RT transcriptional activation.";
RL Plant Methods 8:6-6(2012).
RN [10]
RP INTERACTION WITH NPR1/NH1 AND NPR3/NH3.
RX PubMed=24919709; DOI=10.1186/1471-2164-15-461;
RA Chern M., Bai W., Ruan D., Oh T., Chen X., Ronald P.C.;
RT "Interaction specificity and coexpression of rice NPR1 homologs 1 and 3
RT (NH1 and NH3), TGA transcription factors and negative regulator of
RT resistance (NRR) proteins.";
RL BMC Genomics 15:461-461(2014).
CC -!- FUNCTION: Transcriptional regulator involved in defense response (By
CC similarity). Acts as transcriptional activator in vitro
CC (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993,
CC ECO:0000269|PubMed:22353606}.
CC -!- SUBUNIT: Interacts with NPR1/NH1 and NPR3/NH3.
CC {ECO:0000269|PubMed:24919709}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions. {ECO:0000269|PubMed:17594063}.
CC -!- SIMILARITY: Belongs to the bZIP family. {ECO:0000305}.
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DR EMBL; AP003287; BAD82019.1; -; Genomic_DNA.
DR EMBL; AP003794; BAD82625.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06782.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75328.1; -; Genomic_DNA.
DR EMBL; CM000138; EEE55708.1; -; Genomic_DNA.
DR EMBL; AK101338; BAG95017.1; -; mRNA.
DR RefSeq; XP_015616943.1; XM_015761457.1.
DR AlphaFoldDB; Q5N7C7; -.
DR STRING; 4530.OS01T0859500-01; -.
DR PaxDb; Q5N7C7; -.
DR PRIDE; Q5N7C7; -.
DR EnsemblPlants; Os01t0859500-01; Os01t0859500-01; Os01g0859500.
DR GeneID; 4325063; -.
DR Gramene; Os01t0859500-01; Os01t0859500-01; Os01g0859500.
DR KEGG; osa:4325063; -.
DR eggNOG; ENOG502QRFK; Eukaryota.
DR HOGENOM; CLU_024782_0_2_1; -.
DR InParanoid; Q5N7C7; -.
DR OMA; RNNNMAN; -.
DR OrthoDB; 823978at2759; -.
DR PlantReactome; R-OSA-6788019; Salicylic acid signaling.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:UniProtKB.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR046347; bZIP_sf.
DR InterPro; IPR025422; TGA_domain.
DR Pfam; PF00170; bZIP_1; 1.
DR Pfam; PF14144; DOG1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
DR PROSITE; PS51806; DOG1; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Plant defense; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..539
FT /note="Transcription factor LG2"
FT /id="PRO_0000437015"
FT DOMAIN 227..271
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT DOMAIN 292..506
FT /note="DOG1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01147"
FT REGION 115..140
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 181..246
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 229..249
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 255..269
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 513..539
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 186..204
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 205..241
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 539 AA; 59539 MW; D8ACC9E5E65FD194 CRC64;
MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF QPAAAAAAYF
GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF PSWPMRQQQQ
LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQPGQEV MMVTTDDYSY
KPGLAAASPS FQQQHQLQHH QQQQLHGGGD HDKRKHGSTR KDGKSVDAKT ERRLAQNREA
ARKSRLRKKA YVQNLETSRV RLQQIEQELQ RARSQGLFLG GCRAAGDMSS GAAMFDMEYA
RWLDDDSKRL TDLRGGLQAH LLDTNLGLIV EECMQHYDEL FQLKAALARS DVFHLLTGTW
ATPAERCFLW MGGFRPSDLL KILIQQLDPL TEQQMLGIYS LQQSSEQAEE ALAQGLQQLH
QSLADTVAAG TLNDGPGVPN YMSLMAIALD KLASLESFYQ QADNLRQQTL HQLRRILTTR
QAARCFLSIG EYYRRLRALS NLWSSRPREN FIGTESVSPT GTELQPMHNQ PQQNQYSGF
