LIMYB_ARATH
ID LIMYB_ARATH Reviewed; 449 AA.
AC Q9FFJ8;
DT 27-MAY-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 104.
DE RecName: Full=L10-interacting MYB domain-containing protein {ECO:0000303|PubMed:25707794};
GN Name=LIMYB {ECO:0000303|PubMed:25707794};
GN OrderedLocusNames=At5g05800 {ECO:0000312|Araport:AT5G05800};
GN ORFNames=MJJ3.22 {ECO:0000312|EMBL:BAB09674.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP FUNCTION, INTERACTION WITH RPL10A, SUBCELLULAR LOCATION, TISSUE
RP SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=25707794; DOI=10.1038/nature14171;
RA Zorzatto C., Machado J.P., Lopes K.V., Nascimento K.J., Pereira W.A.,
RA Brustolini O.J., Reis P.A., Calil I.P., Deguchi M., Sachetto-Martins G.,
RA Gouveia B.C., Loriato V.A., Silva M.A., Silva F.F., Santos A.A., Chory J.,
RA Fontes E.P.;
RT "NIK1-mediated translation suppression functions as a plant antiviral
RT immunity mechanism.";
RL Nature 520:679-682(2015).
CC -!- FUNCTION: Transcriptional repressor that associates with ribosomal
CC protein promoters. {ECO:0000269|PubMed:25707794}.
CC -!- SUBUNIT: Interacts with RPL10A. {ECO:0000269|PubMed:25707794}.
CC -!- INTERACTION:
CC Q9FFJ8; Q93VT9: RPL10A; NbExp=6; IntAct=EBI-16146054, EBI-6391356;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:25707794}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, leaves, roots, stems and
CC flowers. {ECO:0000269|PubMed:25707794}.
CC -!- DISRUPTION PHENOTYPE: Increased begomovirus infection symptoms. Up-
CC regulation of the ribosomal protein genes.
CC {ECO:0000269|PubMed:25707794}.
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DR EMBL; AB005237; BAB09674.1; -; Genomic_DNA.
DR EMBL; CP002688; AED90926.1; -; Genomic_DNA.
DR EMBL; CP002688; AED90927.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70740.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70741.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70742.1; -; Genomic_DNA.
DR EMBL; AK228788; BAF00685.1; -; mRNA.
DR RefSeq; NP_001078536.1; NM_001085067.2.
DR RefSeq; NP_001332325.1; NM_001342838.1.
DR RefSeq; NP_001332326.1; NM_001342837.1.
DR RefSeq; NP_001332327.1; NM_001342836.1.
DR RefSeq; NP_196199.1; NM_120662.3.
DR AlphaFoldDB; Q9FFJ8; -.
DR DIP; DIP-61515N; -.
DR IntAct; Q9FFJ8; 1.
DR STRING; 3702.AT5G05800.2; -.
DR iPTMnet; Q9FFJ8; -.
DR PaxDb; Q9FFJ8; -.
DR PRIDE; Q9FFJ8; -.
DR ProteomicsDB; 238494; -.
DR EnsemblPlants; AT5G05800.1; AT5G05800.1; AT5G05800.
DR EnsemblPlants; AT5G05800.2; AT5G05800.2; AT5G05800.
DR EnsemblPlants; AT5G05800.3; AT5G05800.3; AT5G05800.
DR EnsemblPlants; AT5G05800.4; AT5G05800.4; AT5G05800.
DR EnsemblPlants; AT5G05800.5; AT5G05800.5; AT5G05800.
DR GeneID; 830465; -.
DR Gramene; AT5G05800.1; AT5G05800.1; AT5G05800.
DR Gramene; AT5G05800.2; AT5G05800.2; AT5G05800.
DR Gramene; AT5G05800.3; AT5G05800.3; AT5G05800.
DR Gramene; AT5G05800.4; AT5G05800.4; AT5G05800.
DR Gramene; AT5G05800.5; AT5G05800.5; AT5G05800.
DR KEGG; ath:AT5G05800; -.
DR Araport; AT5G05800; -.
DR TAIR; locus:2166464; AT5G05800.
DR eggNOG; ENOG502QV1X; Eukaryota.
DR HOGENOM; CLU_029074_0_0_1; -.
DR InParanoid; Q9FFJ8; -.
DR OMA; AQFRFKE; -.
DR OrthoDB; 1151925at2759; -.
DR PhylomeDB; Q9FFJ8; -.
DR PRO; PR:Q9FFJ8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FFJ8; baseline and differential.
DR Genevisible; Q9FFJ8; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR InterPro; IPR045026; LIMYB.
DR InterPro; IPR024752; Myb/SANT-like_dom.
DR PANTHER; PTHR31704; PTHR31704; 2.
DR Pfam; PF12776; Myb_DNA-bind_3; 2.
PE 1: Evidence at protein level;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..449
FT /note="L10-interacting MYB domain-containing protein"
FT /id="PRO_0000433024"
FT DOMAIN 162..225
FT /note="Myb-like"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00133"
FT REGION 297..324
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 449 AA; 52690 MW; B4E4F079271F25E1 CRC64;
MRPKAVWEPE YHRVFVDLCV EQTMLGNKPG THFSKEGWRN ILISFQEQTG AMYDRMQLKN
HWDTMSRQWK IWRRLVETSF MNWNPESNRF RATDDDWANY LQENPDAGQY RLSVPHDLKK
LEILFAGCNV EVKNDEVSGV RKRRRSCYEE EDEDNQSMCS SSNPQTKGYW SPSTHKLFLD
LLVQETLKGN RPDTHFNKEG WKTILGTINE NTGLGYTRPQ LKNHWDCTRK AWKIWCQLVG
ASSMKWDPES RSFGATEEEW RIYIRENPRA GQFRHKEVPH ADQLAIIFNG VIEPGETYTP
PSRSRKKLLH NRSESPQWRD TTPLSKMHVD EAETSRQNGC YAESQEDRID SENAQPLDDM
KLMNDVMLQE SPVFVEIESA KPMYSIGECI KSLNAIEEVE QGSELYMFAL DLFLKREYRE
IFLELKKPSL RIAWLQRLQS TSFPIPTTT
