LIPB_MYXXA
ID LIPB_MYXXA Reviewed; 357 AA.
AC Q9X6X4;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1999, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Octanoyltransferase;
DE EC=2.3.1.181;
DE AltName: Full=Lipoate-protein ligase B;
DE AltName: Full=Lipoyl/octanoyl transferase;
DE AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase;
GN Name=lipB;
OS Myxococcus xanthus.
OC Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales;
OC Cystobacterineae; Myxococcaceae; Myxococcus.
OX NCBI_TaxID=34;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Downard J.S., Kupfer D.M., Davis A.J., Roe B.A.;
RT "Sequence analysis of SR171 mutant of the branched-chain keto acid
RT dehydrogenase complex in Myxococcus xanthus.";
RL Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Catalyzes the transfer of endogenously produced octanoic acid
CC from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-
CC dependent enzymes. Lipoyl-ACP can also act as a substrate although
CC octanoyl-ACP is likely to be the physiological substrate (By
CC similarity). {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=L-lysyl-[protein] + octanoyl-[ACP] = H(+) + holo-[ACP] + N(6)-
CC octanoyl-L-lysyl-[protein]; Xref=Rhea:RHEA:17665, Rhea:RHEA-
CC COMP:9636, Rhea:RHEA-COMP:9685, Rhea:RHEA-COMP:9752, Rhea:RHEA-
CC COMP:9928, ChEBI:CHEBI:15378, ChEBI:CHEBI:29969, ChEBI:CHEBI:64479,
CC ChEBI:CHEBI:78463, ChEBI:CHEBI:78809; EC=2.3.1.181;
CC -!- PATHWAY: Protein modification; protein lipoylation via endogenous
CC pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-
CC protein]: step 1/2.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}.
CC -!- MISCELLANEOUS: In the reaction, the free carboxyl group of octanoic
CC acid is attached via an amide linkage to the epsilon-amino group of a
CC specific lysine residue of lipoyl domains of lipoate-dependent enzymes.
CC {ECO:0000250}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the LipB family.
CC {ECO:0000305}.
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DR EMBL; AF153678; AAD34635.1; -; Genomic_DNA.
DR RefSeq; WP_011554218.1; NZ_JABFNQ010000025.1.
DR AlphaFoldDB; Q9X6X4; -.
DR SMR; Q9X6X4; -.
DR GeneID; 41361532; -.
DR OMA; RWLTTHG; -.
DR UniPathway; UPA00538; UER00592.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0033819; F:lipoyl(octanoyl) transferase activity; IEA:UniProtKB-EC.
DR GO; GO:0009249; P:protein lipoylation; IEA:InterPro.
DR CDD; cd16444; LipB; 1.
DR Gene3D; 3.30.930.10; -; 1.
DR HAMAP; MF_00013; LipB; 1.
DR InterPro; IPR045864; aa-tRNA-synth_II/BPL/LPL.
DR InterPro; IPR004143; BPL_LPL_catalytic.
DR InterPro; IPR020476; Nudix_hydrolase.
DR InterPro; IPR015797; NUDIX_hydrolase-like_dom_sf.
DR InterPro; IPR020084; NUDIX_hydrolase_CS.
DR InterPro; IPR000086; NUDIX_hydrolase_dom.
DR InterPro; IPR000544; Octanoyltransferase.
DR InterPro; IPR020605; Octanoyltransferase_CS.
DR Pfam; PF00293; NUDIX; 1.
DR PRINTS; PR00502; NUDIXFAMILY.
DR SUPFAM; SSF55681; SSF55681; 1.
DR SUPFAM; SSF55811; SSF55811; 1.
DR TIGRFAMs; TIGR00214; lipB; 1.
DR PROSITE; PS51733; BPL_LPL_CATALYTIC; 1.
DR PROSITE; PS01313; LIPB; 1.
DR PROSITE; PS51462; NUDIX; 1.
DR PROSITE; PS00893; NUDIX_BOX; 1.
PE 3: Inferred from homology;
KW Acyltransferase; Cytoplasm; Hydrolase; Multifunctional enzyme; Transferase.
FT CHAIN 1..357
FT /note="Octanoyltransferase"
FT /id="PRO_0000062852"
FT DOMAIN 31..219
FT /note="BPL/LPL catalytic"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01067"
FT DOMAIN 224..356
FT /note="Nudix hydrolase"
FT REGION 1..222
FT /note="LipB domain"
FT MOTIF 261..282
FT /note="Nudix box"
FT ACT_SITE 180
FT /note="Acyl-thioester intermediate"
FT /evidence="ECO:0000250"
FT BINDING 76..83
FT /ligand="substrate"
FT /evidence="ECO:0000250"
FT BINDING 149..151
FT /ligand="substrate"
FT /evidence="ECO:0000250"
FT BINDING 162..164
FT /ligand="substrate"
FT /evidence="ECO:0000250"
FT SITE 146
FT /note="Lowers pKa of active site Cys"
FT /evidence="ECO:0000250"
SQ SEQUENCE 357 AA; 39373 MW; 7FA08E117B4A77D3 CRC64;
MNTITVYRLG RVEYEDGLAL MHLFSESRRQ GLSGDVLLLL EHPPILTLGR AAKRENIVAS
DAQLAKEGAE VFETNRGGDV TYHGPGQLVG YPIFLLPEDR RDVRRYVRDV ERSVMQVLAQ
WGITAGPIPK WPGVWIGAEG APDARKIAAI GVHLSRWLTT HGFALNVNTN LDHFQLIVPC
GIREAGVTSM QRELGRALPM AEVEEAIANS FCTVFDSERV DAPPPMRTVS IAVVKGRGPE
ARVLLVRRRP ERGGFWQVLT GRLEAGESPA QAAARELEEE TGLRVPLVDL DYRHAFALGE
ALPPQLVEEN GFAVHVPPDA DVRLGAEHDA FEWVDVPTAL ERLPFQGLRE TVKRATA