LMBD1_ARATH
ID LMBD1_ARATH Reviewed; 509 AA.
AC Q9SR93; Q3EBA5; Q94C82;
DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT 24-MAR-2009, sequence version 2.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=LIMR family protein At3g08930;
GN OrderedLocusNames=At3g08930; ORFNames=T16O11.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Stracke R., Palme K.;
RT "Signal peptide selection derived cDNAs from Arabidopsis thaliana leaves
RT and guard cells.";
RL Submitted (AUG-1998) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the LIMR family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF07832.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC010871; AAF07832.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE74696.1; -; Genomic_DNA.
DR EMBL; AF083733; AAN60291.1; -; mRNA.
DR EMBL; AY035091; AAK59596.1; -; mRNA.
DR EMBL; BT020414; AAV97805.1; -; mRNA.
DR RefSeq; NP_566338.2; NM_111727.6.
DR AlphaFoldDB; Q9SR93; -.
DR SMR; Q9SR93; -.
DR BioGRID; 5376; 68.
DR IntAct; Q9SR93; 67.
DR PaxDb; Q9SR93; -.
DR PRIDE; Q9SR93; -.
DR ProteomicsDB; 238470; -.
DR EnsemblPlants; AT3G08930.1; AT3G08930.1; AT3G08930.
DR GeneID; 820042; -.
DR Gramene; AT3G08930.1; AT3G08930.1; AT3G08930.
DR KEGG; ath:AT3G08930; -.
DR Araport; AT3G08930; -.
DR TAIR; locus:2097618; AT3G08930.
DR eggNOG; ENOG502QPKQ; Eukaryota.
DR HOGENOM; CLU_026480_2_0_1; -.
DR InParanoid; Q9SR93; -.
DR OMA; KSAMCWV; -.
DR OrthoDB; 792552at2759; -.
DR PhylomeDB; Q9SR93; -.
DR PRO; PR:Q9SR93; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SR93; baseline and differential.
DR Genevisible; Q9SR93; AT.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009506; C:plasmodesma; HDA:TAIR.
DR InterPro; IPR006876; LMBR1-like_membr_prot.
DR Pfam; PF04791; LMBR1; 2.
PE 2: Evidence at transcript level;
KW Coiled coil; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..509
FT /note="LIMR family protein At3g08930"
FT /id="PRO_0000366936"
FT TRANSMEM 8..28
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 44..64
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 90..110
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 128..148
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 208..228
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 332..352
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 382..402
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 422..442
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 475..495
FT /note="Helical"
FT /evidence="ECO:0000255"
FT COILED 251..316
FT /evidence="ECO:0000255"
SQ SEQUENCE 509 AA; 56545 MW; 5B586A9CE8F469C1 CRC64;
MGDFNLALVI VAIVVCVIVF ISSIYLLVNY QHPDDANQAY FPKFVVVFGL SIAMISILML
PADVANRHAC RHAIYNGACN LTLPMKDLWL AIYIVDAILV FFVIPFAMFF YEGDQDKTLG
KRIKSALIWV VTTAVVCALV LGILYGVIGK VDFSVRHLAS ATSTFPTSWQ FSNTQPCIGN
TARQCSAFTA NPTSEKTWTM RTTFPEYVVA LATIVGSVLF TIFGGVGIAC LPLGLITAFI
RRPKAVITRS QYIKEATELG KKARELKKAA DGLHQEERSG AKGRKWRKNV KAVEKELLQL
EEDVNLLEEM YPQGEQAETA WAFTVLGYLA KFILGIVGLI VSIAWVAHII IYLLVDPPLS
PFLNEVFIKL DDVWGLLGTA AFAFFCFYLL LAVIAGAMML GLKLVFITIH PMKWGATLMN
SFLFNVGLIL LCSISVIQFC ATAFGYYAQA TAAQEIFGHT LQSLRGIKYL YKYNVFQIGF
VILAGLTFLY YIAFGWRRKK TSGRFQLSS
