ID   LMBD1_ORYSJ             Reviewed;         510 AA.
AC   Q658I5; A0A0P0WRT5; Q658I4;
DT   24-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT   25-OCT-2004, sequence version 1.
DT   03-AUG-2022, entry version 83.
DE   RecName: Full=LIMR family protein Os06g0128200;
GN   OrderedLocusNames=Os06g0128200, LOC_Os06g03760;
GN   ORFNames=OsJ_19972, OSJNBa0038F22.26-1, OSJNBa0038F22.26-2, P0538C01.4-1,
GN   P0538C01.4-2;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC       protein {ECO:0000305}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q658I5-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q658I5-2; Sequence=VSP_036586;
CC   -!- SIMILARITY: Belongs to the LIMR family. {ECO:0000305}.
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DR   EMBL; AP000391; BAD44782.1; -; Genomic_DNA.
DR   EMBL; AP000391; BAD44783.1; -; Genomic_DNA.
DR   EMBL; AP002838; BAD67932.1; -; Genomic_DNA.
DR   EMBL; AP002838; BAD67933.1; -; Genomic_DNA.
DR   EMBL; AP008212; BAF18584.1; -; Genomic_DNA.
DR   EMBL; AP014962; BAS95946.1; -; Genomic_DNA.
DR   EMBL; AP014962; BAS95947.1; -; Genomic_DNA.
DR   EMBL; CM000143; EEE65018.1; -; Genomic_DNA.
DR   EMBL; AK060698; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; AK068886; BAG91141.1; -; mRNA.
DR   RefSeq; XP_015642888.1; XM_015787402.1. [Q658I5-1]
DR   AlphaFoldDB; Q658I5; -.
DR   SMR; Q658I5; -.
DR   STRING; 39947.Q658I5; -.
DR   PRIDE; Q658I5; -.
DR   EnsemblPlants; Os06t0128200-01; Os06t0128200-01; Os06g0128200. [Q658I5-1]
DR   EnsemblPlants; Os06t0128200-02; Os06t0128200-02; Os06g0128200. [Q658I5-2]
DR   GeneID; 4339983; -.
DR   Gramene; Os06t0128200-01; Os06t0128200-01; Os06g0128200. [Q658I5-1]
DR   Gramene; Os06t0128200-02; Os06t0128200-02; Os06g0128200. [Q658I5-2]
DR   KEGG; osa:4339983; -.
DR   eggNOG; ENOG502QPKQ; Eukaryota.
DR   HOGENOM; CLU_026480_2_0_1; -.
DR   InParanoid; Q658I5; -.
DR   OMA; KSAMCWV; -.
DR   OrthoDB; 792552at2759; -.
DR   Proteomes; UP000000763; Chromosome 6.
DR   Proteomes; UP000007752; Chromosome 6.
DR   Proteomes; UP000059680; Chromosome 6.
DR   Genevisible; Q658I5; OS.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   InterPro; IPR006876; LMBR1-like_membr_prot.
DR   Pfam; PF04791; LMBR1; 2.
PE   2: Evidence at transcript level;
KW   Alternative splicing; Coiled coil; Membrane; Reference proteome;
KW   Transmembrane; Transmembrane helix.
FT   CHAIN           1..510
FT                   /note="LIMR family protein Os06g0128200"
FT                   /id="PRO_0000366938"
FT   TRANSMEM        8..28
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        44..64
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        89..109
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        128..148
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        221..241
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        336..356
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        375..395
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        427..447
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        476..496
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   COILED          252..317
FT                   /evidence="ECO:0000255"
FT   VAR_SEQ         186..255
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:12869764"
FT                   /id="VSP_036586"
FT   CONFLICT        9
FT                   /note="V -> A (in Ref. 5; AK060698)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        312
FT                   /note="Y -> C (in Ref. 5; AK060698)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   510 AA;  56117 MW;  838F584B97C51518 CRC64;
     MGDFNVALVI VAAVVSVLVL LVSVYLLINY QHPDDANQAY FPKLVVVLGI TVALLSILML
     PADVANRQAC RRAIYSGACS LTLPMKTLWL AVYIADAVLV FLVIPFAMFY YEGDQDKSVG
     KRLTSALLWV AVSAVVCGLI LGILYGLVGK VDFTVRHLSS AVETFPNSFT SFSTGQPCIS
     TSPKQCAAYT APANSQTTWT MRATFPEYVV ALATIVGSVL FTIFGGVGIA CLPLGLIFSF
     VRRPKAVITR SQYIKEATEL GKKARELKKA AEALHQEEKS GKKGRKWRKN VKALGKELVL
     LEDDMKALEE MYPQGEQAEA TWALTVLGYI GKLLFGAVGL IISIAWVAHI VIYLLIDPPL
     SSFLNEIFVK LDGVWGLLGT AAFAFFCFYL LIAVIAGEMM LGLKLVFITI HPMKWGGTLM
     NSFLFNVGLI LLCSISVIQF CATAFAYYAQ ATAAQEIFGH TLQSLRGIKY LYKYNVFQYG
     FVALAILTLF YYAIFGWRKR KPTGRFQLSN